Browse Element(s) Details


OsAffx.21138.1.S1_at

Description tigr:9629.m02596
TID=OsAffx.21138.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2718011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27150Os.15285.1.S1_a_at11/111+15457791..15466325Cullin-1, putative, expressed
LOC_Os01g27160Os.33929.1.S1_at11/111+15472955..15479141Cullin-1, putative, expressed
LOC_Os01g27170Os.29851.1.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.1.S2_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170Os.29851.2.S1_x_at11/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27170OsAffx.12970.1.S1_s_at1/111+15479168..15484051Potassium transporter 7, putative, expressed
LOC_Os01g27180OsAffx.21138.1.S1_at11/111+15485296..15485751hypothetical protein
LOC_Os01g27190Os.4041.1.S1_at11/111+15487289..15488494C2 domain containing protein, expressed
LOC_Os01g27200OsAffx.11222.1.S1_at11/111+15494958..15497110expressed protein
LOC_Os01g27200OsAffx.14881.1.S1_at1/111+15494958..15497110expressed protein
LOC_Os01g27210Os.7911.1.S1_at11/111+15497241..15498725Glutathione S-transferase IV, putative, expressed
LOC_Os01g27219NANA1+15500532..15500677NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21138.1.S1_at--44--8891Chr01:15485675..15485699 (25 bp)
TGAGGACAGTGGTAGCGGGCAGGGA
LOC_Os01g27180
OsAffx.21138.1.S1_at--956--8191Chr01:15485647..15485671 (25 bp)
GGAAGGCACCTCGAAGCAGCGGCAA
LOC_Os01g27180
OsAffx.21138.1.S1_at--869--911Chr01:15485644..15485668 (25 bp)
AGGCACCTCGAAGCAGCGGCAACAG
LOC_Os01g27180
OsAffx.21138.1.S1_at--788--8111Chr01:15485615..15485639 (25 bp)
GGACGATGGAGCCAGCTCGGAGTGG
LOC_Os01g27180
OsAffx.21138.1.S1_at--154--4471Chr01:15485516..15485540 (25 bp)
GCCTGCTGCGTGGAGCTCCCTATGA
LOC_Os01g27180
OsAffx.21138.1.S1_at--94--9311Chr01:15485500..15485524 (25 bp)
TCCCTATGAACATCACCGACCTGTA
LOC_Os01g27180
OsAffx.21138.1.S1_at--947--4291Chr01:15485498..15485522 (25 bp)
CCTATGAACATCACCGACCTGTACA
LOC_Os01g27180
OsAffx.21138.1.S1_at--1011--531Chr01:15485449..15485473 (25 bp)
ATCGCCTCCAGCTAGTGTCGCTCGA
LOC_Os01g27180
OsAffx.21138.1.S1_at--166--9231Chr01:15485443..15485467 (25 bp)
TCCAGCTAGTGTCGCTCGAGCTCCT
LOC_Os01g27180
OsAffx.21138.1.S1_at--318--4791Chr01:15485351..15485375 (25 bp)
GCTCCTCCCCAGTGGTGGTCGTCAT
LOC_Os01g27180
OsAffx.21138.1.S1_at--928--4171Chr01:15485344..15485368 (25 bp)
CCCAGTGGTGGTCGTCATCGCCTTC
LOC_Os01g27180
Target Sequence 
TGAGGACAGTGGTAGCGGGCAGGGACGGGGAAGGCACCTCGAAGCAGCGGCAACAGGCGGGGACGATGGAGCCAGCTCGG
AGTGGCGGAGGGGGAGCCAAGAACGGCGGTGGGGGGGCACGGCTGCTGTTGTGCGTGCTCGCCGCCAAAGCTCATGCCGG
CCTGCTGCGTGGAGCTCCCTATGAACATCACCGACCTGTACATCGCCGCCGATTCCCTTTCCGGCCATCGCCTCCAGCTA
GTGTCGCTCGAGCTCCTCCACCTCCGCCACTCGAGTCCCACCGCCCCCAGTTGCACTCCTCCTCGACGGCCGCCACCGCC
ACGCGCTCCTCCCCAGTGGTGGTCGTCATCGCCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21138.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis