Browse Element(s) Details


OsAffx.12970.1.S1_s_at

Description tigr:9631.m02144
TID=OsAffx.12970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plant acid phosphatase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2148011/11plant acid phosphatase family protein, expressed
LOC_Os01g271701/11Potassium transporter 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21419NANA3+12222613..12228685retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g21440OsAffx.12969.1.S1_at11/113+12234951..12235654hypothetical protein
LOC_Os03g21450OsAffx.3289.1.S1_at11/113+12239628..12242232Bromodomain containing protein, expressed
LOC_Os03g21460Os.6480.1.S1_at11/113+12242293..12245287Hydroxyacylglutathione hydrolase, putative, expressed
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006813biological_processpotassium ion transport
GO:0009605biological_processresponse to external stimulus
GO:0009826biological_processunidimensional cell growth
GO:0009932biological_processcell tip growth
GO:0016020cellular_componentmembrane
GO:0003993molecular_functionacid phosphatase activity
GO:0015079molecular_functionpotassium ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12970.1.S1_s_at--1034--4811Chr03:12251873..12251897 (25 bp)
GCTCTACTACGAGGCCAAGCAGTTC
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--351--9451Chr03:12251351..12251375 (25 bp)
TCGGCCTTCAAGACGTGGGCTAGCA
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--382--6491Chr03:12251310..12251334 (25 bp)
GATACCTGCGGTTCTTGAGTTGTTC
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--787--1231Chr03:12251293..12251317 (25 bp)
AGTTGTTCGCCACATTGCAAGCCAA
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--1146--7971Chr03:12251238..12251262 (25 bp)
GGATGAAGAGACACTGGCCACTTGC
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--562--8451Chr03:12251224..12251248 (25 bp)
TGGCCACTTGCACGTCAGAGAATCT
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--366--1373Chr04:19743636..19743742 (25 bp)
AGAGCTCGTCGGTGTTCAAGTCGGC
NONE
OsAffx.12970.1.S1_s_at--649--3351Chr03:12250388..12250412 (25 bp)
CATGTACTACGTCCCCTGAAAACTG
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--102--2431Chr03:12250370..12250394 (25 bp)
AAAACTGAACCGGACCACATGGCCG
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--642--3311Chr03:12250355..12250379 (25 bp)
CACATGGCCGGACCGATCGATTGAT
LOC_Os03g21480
OsAffx.12970.1.S1_s_at--191--5551Chr03:12250256..12250280 (25 bp)
GAAACTGCCAACTATCTCTACATTT
LOC_Os03g21480
Target Sequence 
GCTCTACTACGAGGCCAAGCAGTTCGGGGCCTATGATCCCTCGGCCTTCAAGACGTGGGCTAGCAAAGGGGCTTGCCCGG
GGATACCTGCGGTTCTTGAGTTGTTCGCCACATTGCAAGCCAAGGGGTTCAAGGTTTTCCTCCTCTCCGGGAGGGATGAA
GAGACACTGGCCACTTGCACGTCAGAGAATCTCGAGTCAGAGGGGTTCTTGGGGTATGAGAGGCTCATCATGAGGAGCCC
GGAGTACCGGGGGCAGAGCTCGTCGGTGTTCAAGTCGGCGATGAGGAAGCGGCTGGTGGAGGAGGAGGGCTACAGGATCC
GCGGCAACGTCGGCGACCAGTGGAGCGACCTGCAGGGCGACTACGTCGGCGACCGCGTCTTCAAGATCCCCAACCCCATG
TACTACGTCCCCTGAAAACTGAACCGGACCACATGGCCGGACCGATCGATTGATCGGTTCGCGTGGGCGCATCCGGGAGC
CGTGTAAACGAACGGCAAATGCAAGAATCTTCTTAATGCAAAAGAAGAGAAACTGCCAACTATCTCTACATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12970.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis