Browse Element(s) Details


Os.56303.1.S1_at

Description gb:AK109811.1
DB_XREF= gi:32995020
TID=Os.56303.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56303 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-G10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-G10, full insert sequence.
FL= gb:AK109811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2152011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21470OsAffx.25182.1.S1_s_at10/113+12248100..1224982060S ribosomal protein L10, putative, expressed
LOC_Os03g21480OsAffx.12970.1.S1_s_at11/113+12250221..12252486plant acid phosphatase family protein, expressed
LOC_Os03g21490Os.4959.1.S1_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21490Os.37473.1.S1_x_at11/113+12255057..12258990ATP-dependent transporter ycf16, putative, expressed
LOC_Os03g21500OsAffx.12971.1.S1_x_at11/113+12260026..12260497expressed protein
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56303.1.S1_at--66--6171Chr03:12271171..12271195 (25 bp)
GAGGTTCCATTTTCTGATGCTCCAA
LOC_Os03g21520
Os.56303.1.S1_at--707--91Chr03:12271133..12271157 (25 bp)
ATTCCGGTTGATTTCATTCGTTGCT
LOC_Os03g21520
Os.56303.1.S1_at--733--4031Chr03:12271115..12271139 (25 bp)
CGTTGCTAGGTATGTCAGTGGTGCT
LOC_Os03g21520
Os.56303.1.S1_at--828--7071Chr03:12271073..12271097 (25 bp)
GTAATTCTCCATTAATGCCATCAAG
LOC_Os03g21520
Os.56303.1.S1_at--246--10671Chr03:12271013..12271037 (25 bp)
TTCCTGTTTTGATTCTGCTCACACA
LOC_Os03g21520
Os.56303.1.S1_at--247--9091Chr03:12270998..12271022 (25 bp)
TGCTCACACAGTTATCTCGCTAAGA
LOC_Os03g21520
Os.56303.1.S1_at--11--6511Chr03:12270933..12270957 (25 bp)
GATATGGAACCTCTGTTCAGTTCTT
LOC_Os03g21520
Os.56303.1.S1_at--904--10531Chr03:12270918..12270942 (25 bp)
TTCAGTTCTTGGTAGTGTGCTCGTG
LOC_Os03g21520
Os.56303.1.S1_at--392--8691Chr03:12270903..12270927 (25 bp)
TGTGCTCGTGTCACTACCAGTTTTT
LOC_Os03g21520
Os.56303.1.S1_at--215--1451Chr03:12270847..12270871 (25 bp)
AGAAGCTCTTGTTCCCCAGTTATAG
LOC_Os03g21520
Os.56303.1.S1_at--956--2211Chr03:12270812..12270836 (25 bp)
ACAAGAGGCCTTCCTGACCATGTGG
LOC_Os03g21520
Target Sequence 
GAGGTTCCATTTTCTGATGCTCCAATCGTCGGTGCTCCATTCCGGTTGATTTCATTCGTTGCTAGGTATGTCAGTGGTGC
TGATTTGGTGAACCAGAAGTAATTCTCCATTAATGCCATCAAGCAGCTTGAGATCTGTATTTCTTGGAAAGAGGAGTCTT
CCTGTTTTGATTCTGCTCACACAGTTATCTCGCTAAGATTGTGAGGATGTATACGATGGATGCACTGAATTCAACAGAGA
TATGGAACCTCTGTTCAGTTCTTGGTAGTGTGCTCGTGTCACTACCAGTTTTTCTTCCTCCCCTGTCAATTTTTCAGGGG
CAGCAGAAGCTCTTGTTCCCCAGTTATAGTGTTATACACACAAGAGGCCTTCCTGACCATGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis