Browse Element(s) Details


Os.24926.1.S1_at

Description gb:AK099791.1
DB_XREF= gi:32985000
TID=Os.24926.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24926 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097C16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097C16, full insert sequence.
FL= gb:AK099791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2154010/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21510Os.48959.1.S1_at7/113+12265627..12270343Protein kinase domain containing protein, expressed
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24926.1.S1_at--673--4931Chr03:12290104..12290128 (25 bp)
GCATTGACCGTCCTTCGATGGGAGA
LOC_Os03g21540
Os.24926.1.S1_at--747--5611Chr03:12290285..12290309 (25 bp)
GACAACTACCTCGATAAGCATGGGT
LOC_Os03g21540
Os.24926.1.S1_at--955--2971Chr03:12290400..12290424 (25 bp)
AATGTCTCGGTTTGTTACCCTGCAG
LOC_Os03g21540
Os.24926.1.S1_at--440--1811Chr03:12290416..12290440 (25 bp)
ACCCTGCAGGCATAATCTATTCATT
LOC_Os03g21540
Os.24926.1.S1_at--394--3571Chr03:12290444..12290468 (25 bp)
CATATGTTCATGAGTTTGCCCTTAT
LOC_Os03g21540
Os.24926.1.S1_at--511--1191Chr03:12290456..12290480 (25 bp)
AGTTTGCCCTTATGTTCTCTTGAAT
LOC_Os03g21540
Os.24926.1.S1_at--1111--3131Chr03:12290510..12290534 (25 bp)
AATTAGATGGTTCTGTCTTTCCCTG
LOC_Os03g21540
Os.24926.1.S1_at--1021--10571Chr03:12290539..12290563 (25 bp)
TTCTCCCTGATGTAGTGCCTATAAG
LOC_Os03g21540
Os.24926.1.S1_at--761--4451Chr03:12290555..12290579 (25 bp)
GCCTATAAGCTTATCGGCATGTATT
LOC_Os03g21540
Os.24926.1.S1_at--1091--231Chr03:12290583..12290607 (25 bp)
ATATACCATACCACTGCTATTGACC
LOC_Os03g21540
Os.24926.1.S1_at--1108--10471NONE
TTAATCAGTAATCGGTCGGAGCCCC
NONE
Target Sequence 
GCATTGACCGTCCTTCGATGGGAGATGTGCTGTGGAACTTGGAATTTGCCCTTCAAATGCAGGAAAGTGCAGAGGAGAGC
GGAAGCCTTGGATGTGGGATGTCAGACGACAGCACTCCCCTTGTGATAGTTGGAAAGAAGGATCCCAATGATCCATCTAT
CGAGTCAAGCACCACGACAACGACAACTACCTCGATAAGCATGGGTGAGCAGAGTGTTGCAAGTATTGACTCGGANGGGC
TGACGCCTAGTGCTGTCTTCTCGCAGATCATGAACCCCAAGGGACGGTGAGGTAACAATGTCTCGGTTTGTTACCCTGCA
GGCATAATCTATTCATTCAGCATATGTTCATGAGTTTGCCCTTATGTTCTCTTGAATTATGGATCGGAAGTCAGATAATT
GTTTCAAATTAGATGGTTCTGTCTTTCCCTGTGTTTTCTCCCTGATGTAGTGCCTATAAGCTTATCGGCATGTATTGTAA
TATACCATACCACTGCTATTGACCCAACGAATGATACTGTATGAGAGAGTGATACGCATGATCCACACTCCNTTTTTTGT
TATCTTAATCAGTAATCGGTCGGAGCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24926.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis