Browse Element(s) Details


OsAffx.25183.1.S1_at

Description tigr:9631.m02156
TID=OsAffx.25183.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2159011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25183.1.S1_at--1079--5811Chr03:12307336..12307360 (25 bp)
GACCGGTTTCCCTTTTCTGATGACT
LOC_Os03g21590
OsAffx.25183.1.S1_at--1026--7851Chr03:12307332..12307356 (25 bp)
GGTTTCCCTTTTCTGATGACTTCGC
LOC_Os03g21590
OsAffx.25183.1.S1_at--611--10371Chr03:12307324..12307348 (25 bp)
TTTTCTGATGACTTCGCCGGGCGAG
LOC_Os03g21590
OsAffx.25183.1.S1_at--892--10571Chr03:12307322..12307346 (25 bp)
TTCTGATGACTTCGCCGGGCGAGAT
LOC_Os03g21590
OsAffx.25183.1.S1_at--983--2051Chr03:12307314..12307338 (25 bp)
ACTTCGCCGGGCGAGATTACGACGT
LOC_Os03g21590
OsAffx.25183.1.S1_at--299--9331Chr03:12307311..12307335 (25 bp)
TCGCCGGGCGAGATTACGACGTTTG
LOC_Os03g21590
OsAffx.25183.1.S1_at--30--1851Chr03:12307300..12307320 (21 bp)
ACGACGTTTGGGTAGAGTACGACAT
LOC_Os03g21590
OsAffx.25183.1.S1_at--773--4011Chr03:12307137..12307316 (25 bp)
CGTTTGGGTAGAGTACGACATGTCG
LOC_Os03g21590
OsAffx.25183.1.S1_at--583--1251Chr03:12306827..12307010 (25 bp)
AGATTCCAGGCGTTTTTGGCAATTG
LOC_Os03g21590
OsAffx.25183.1.S1_at--1056--71Chr03:12306825..12307008 (25 bp)
ATTCCAGGCGTTTTTGGCAATTGTC
LOC_Os03g21590
OsAffx.25183.1.S1_at--1028--4331Chr03:12306822..12307005 (25 bp)
CCAGGCGTTTTTGGCAATTGTCACG
LOC_Os03g21590
Target Sequence 
GACCGGTTTCCCTTTTCTGATGACTTCGCCGGGCGAGATTACGACGTTTGGGTAGAGTACGACATGTCGGAGATGGTCAC
TGTGCAATTTCTGGATCTGAGAATTCATCGCATGCCCGCCAACGACGTCCTACAACTTCGTCGCCGTCTTCCTCCTCTGG
AGTTGAACTGCGTCCAATCCGTGGACCAATTCAAAAGATTCCAGGCGTTTTTGGCAATTGTCACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25183.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis