Browse Element(s) Details


Os.13521.1.S1_at

Description gb:AK072649.1
DB_XREF= gi:32982672
TID=Os.13521.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131A03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131A03, full insert sequence.
FL= gb:AK072649.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2162011/11Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os12g341102/11ATP synthase subunit C family protein
LOC_Os11g292002/11Protein transport protein Sec24-like CEF, putative, expressed
LOC_Os03g215801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006979biological_processresponse to oxidative stress
GO:0009409biological_processresponse to cold
GO:0009651biological_processresponse to salt stress
GO:0015992biological_processproton transport
GO:0016192biological_processvesicle-mediated transport
GO:0045860biological_processpositive regulation of protein kinase activity
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004676molecular_function3-phosphoinositide-dependent protein kinase activity
GO:0005215molecular_functiontransporter activity
GO:0005515molecular_functionprotein binding
GO:0016301molecular_functionkinase activity
GO:0016887molecular_functionATPase activity
GO:0035091molecular_functionphosphoinositide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13521.1.S1_at--110--1452Chr03:12319586..12319610 (25 bp)
AGAAGCTAGACTCCCGACAGATTCA
LOC_Os03g21620
Os.13521.1.S1_at--322--5372Chr03:12319382..12319406 (25 bp)
GAAGACCTCCAGTTGAGACCGAAAT
LOC_Os03g21620
Os.13521.1.S1_at--21--5832Chr03:12319366..12319390 (25 bp)
GACCGAAATACATCTTGCCACTGGG
LOC_Os03g21620
Os.13521.1.S1_at--329--5632Chr03:12319198..12319222 (25 bp)
GACAAATTTGTCTATTGCCAGATGG
LOC_Os03g21620
Os.13521.1.S1_at--982--1311Chr03:12319179..12319203 (25 bp)
AGATGGAACAGTTGCCCTGGCTTCT
LOC_Os03g21620
Os.13521.1.S1_at--774--1235Chr11:16426095..16426117 (23 bp)
AGTTGCCCTGGCTTCTATGATCAAC
LOC_Os11g29200
Os.13521.1.S1_at--171--8637Chr11:16426117..16426137 (21 bp)
TGGGCCCCTGGCACATTTAGGTTTT
LOC_Os11g29200
Os.13521.1.S1_at--569--4791Chr03:12319118..12319142 (25 bp)
GCACATTTAGGTTTTCTCGGCCGTT
LOC_Os03g21620
Os.13521.1.S1_at--674--4451Chr03:12319099..12319123 (25 bp)
GCCGTTCACGTACATGTTTCCAAAT
LOC_Os03g21620
Os.13521.1.S1_at--892--9211Chr03:12319075..12319099 (25 bp)
TCCAAATCCTGCTGCATGTTGCAAC
LOC_Os03g21620
Os.13521.1.S1_at--710--9051Chr03:12319063..12319087 (25 bp)
TGCATGTTGCAACACAAATCCTGTT
LOC_Os03g21620
Target Sequence 
AGAAGCTAGACTCCCGACAGATTCAGCCAAGCTTCCGCCCAAATGTTGCTGGCAAAACCTGCATCGCCAACTTTGACGAG
TGCTGGACCAGCATGCCCGTGCTCGACTCTCCAGTGGCCAGCCCTGTCGCTGCAGATAGCAACTTCGTGGGATTCAGCTA
TGTGAGGCCAGCGCCCTTCCTTCAGAGGCCGAGTCCTCTAGGCTGAAGACCTCCAGTTGAGACCGAAATACATCTTGCCA
CTGGGTATGAAGCTGACAAAATTTCCTGTTTCGATGATTATTATGTAAAACTACCTATTTATGTTGTTCGGTTTGTCTGG
GAAAACCCCAGTATCTTTTCTTCGTTGAAGATATACTAGTAAAAGATGAACGTGGTACTTGTTGAAACCAGACAAATTTG
TCTATTGCCAGATGGAACAGTTGCCCTGGCTTCTATGATCAACCCCTGCCCCCTGGGCCCTGGGCCCCTGGCACATTTAG
GTTTTCTCGGCCGTTCACGTACATGTTTCCAAATCCAAATCCTGCTGCATGTTGCAACACAAATCCTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis