Browse Element(s) Details


Os.20465.1.S1_at

Description gb:AK120545.1
DB_XREF= gi:37990168
TID=Os.20465.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.20465 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129J23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129J23, full insert sequence.
FL= gb:AK120545.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2156010/11possible Photosystem II reaction center Psb27 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21520Os.56303.1.S1_at11/113+12270650..12275674expressed protein
LOC_Os03g21530Os.19112.2.S1_x_at11/113+12278547..12282414expressed protein
LOC_Os03g21540Os.24926.1.S1_at10/113+12287498..12290693protein kinase family protein, putative, expressed
LOC_Os03g21550Os.7540.2.S1_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S2_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21550Os.7540.1.S1_a_at11/113+12294537..12299509Eukaryotic translation initiation factor 2 beta subunit, putative, expressed
LOC_Os03g21560Os.20465.1.S1_at10/113+12299746..12300629possible Photosystem II reaction center Psb27 protein, putative, expressed
LOC_Os03g21570Os.54916.1.S1_at2/113+12301267..12302416hypothetical protein
LOC_Os03g21580OsAffx.12972.1.S1_at10/113+12303212..12304516hypothetical protein
LOC_Os03g21580Os.13521.1.S1_at1/113+12303212..12304516hypothetical protein
LOC_Os03g21590OsAffx.25183.1.S1_at11/113+12306468..12309410expressed protein
LOC_Os03g21590OsAffx.25183.1.S1_s_at11/113+12306468..12309410expressed protein
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0030095cellular_componentphotosystem II (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20465.1.S1_at--948--5311Chr03:12300052..12300076 (25 bp)
GAAGGTGCGGTCGACGATCAACATG
LOC_Os03g21560
Os.20465.1.S1_at--432--4531Chr03:12300174..12300198 (25 bp)
GCCGCCCGTCCTTCAGGGAGATGTA
LOC_Os03g21560
Os.20465.1.S1_at--665--1072Chr03:12300188..12300212 (25 bp)
AGGGAGATGTACTCCGCGCTCAACG
LOC_Os03g21560
Os.20465.1.S1_at--864--8711Chr03:12300216..12300240 (25 bp)
TGTCGGGCCACTACATCAGCTTCGG
LOC_Os03g21560
Os.20465.1.S1_at--915--6591Chr03:12300343..12300367 (25 bp)
GATTGAGCCGAGTGCTTACGGCCAC
LOC_Os03g21560
Os.20465.1.S1_at--290--1831Chr03:12300406..12300430 (25 bp)
ACGCGGCACATTCACTTTTTGTAAC
LOC_Os03g21560
Os.20465.1.S1_at--53--8751Chr03:12300425..12300449 (25 bp)
TGTAACTACTATACTACCGTCGCGT
LOC_Os03g21560
Os.20465.1.S1_at--310--9451Chr03:12300467..12300491 (25 bp)
TCGGCTTTGCTCTTGTCGAGTGGAA
LOC_Os03g21560
Os.20465.1.S1_at--702--5252Chr03:12300489..12300513 (25 bp)
GAATCGAATCGGTGGAGGCTTTGAA
LOC_Os03g21560
Os.20465.1.S1_at--984--6911Chr03:12300552..12300576 (25 bp)
GTATGATTTTTGGTTCAGCTGACAT
LOC_Os03g21560
Os.20465.1.S1_at--1081--651NONE
ATGCAACCTCCCTAGAGTTTCCATT
NONE
Target Sequence 
GAAGGTGCGGTCGACGATCAACATGGACAGGGCGGACCCCGGGGTGGCGGACGCGGTGGCGGAGCTCCGCGAGCTGTCCA
ACTCGTGGGTGGCCAAGTACCGCAGGGAGAAGTCGCTGCTGGGCCGCCCGTCCTTCAGGGAGATGTACTCCGCGCTCAAC
GCCGTGTCGGGCCACTACATCAGCTTCGGCCCCACGGCCCCCATCCCCAACAAGCGCCGCGCCCGCATCCTCGAGGAGAT
GGACACCGCCGAGAAGGCCCTGCTCCGCGGCCGGTGAGGTGAGTGATGATTGATTGAGCCGAGTGCTTACGGCCACCGAT
NNNNNCTTTCTCGTGTGAGACGCACGCACGCGCGTGCGTACGCGGCACATTCACTTTTTGTAACTACTATACTACCGTCG
CGTCGCGATGGGGCCGGGCGTCGGCTTTGCTCTTGTCGAGTGGAATCGAATCGGTGGAGGCTTTGAAATTATTACTACTG
AGTTGTATGTGTATTTTTTTTTTCTGTATGATTTTTGGTTCAGCTGACATGGTGAGGATTACACGGTTGGCTTGGGGACA
TGCAACCTCCCTAGAGTTTCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20465.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis