Browse Element(s) Details


Os.54916.1.S1_at

Description gb:AK107094.1
DB_XREF= gi:32992303
TID=Os.54916.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-121-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-121-H05, full insert sequence.
FL= gb:AK107094.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2170011/11expressed protein
LOC_Os03g215702/11hypothetical protein
LOC_Os01g557101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21730Os.50062.1.S1_at11/113+12390108..12393951leucine-rich repeat transmembrane protein kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54916.1.S1_at--1002--1652Chr03:12369882..12369906 (25 bp)
AGCGCCTCAAGTGGAACCGACAAGA
LOC_Os03g21700
Os.54916.1.S1_at--747--4111Chr03:12369978..12370002 (25 bp)
CGCAGCAACGTGTCTTCCAAGAAGA
LOC_Os03g21700
Os.54916.1.S1_at--428--1451Chr03:12369997..12370021 (25 bp)
AGAAGAGCGCCACGATCTCATCGGG
LOC_Os03g21700
Os.54916.1.S1_at--235--3372Chr03:12370015..12370039 (25 bp)
CATCGGGTGTCCTCGGACCAAGAAA
LOC_Os03g21700
Os.54916.1.S1_at--574--7253Chr03:12370176..12370200 (25 bp)
GTGCCATTCGGAGCCGATCCTTACA
LOC_Os03g21700
Os.54916.1.S1_at--875--8651Chr03:12370227..12370251 (25 bp)
TGTGGCGGCGCTGCTTACGGCTACT
LOC_Os03g21700
Os.54916.1.S1_at--415--1331Chr03:12370279..12370303 (25 bp)
AGAGGACGCGCCTGCGATGATCGCA
LOC_Os03g21700
Os.54916.1.S1_at--914--6291Chr03:12370294..12370318 (25 bp)
GATGATCGCACGTCACCGGTCAATT
LOC_Os03g21700
Os.54916.1.S1_at--1002--1771Chr03:12370308..12370332 (25 bp)
ACCGGTCAATTGTTGCCTGCTGGCT
LOC_Os03g21700
Os.54916.1.S1_at--997--9151Chr03:12370332..12370356 (25 bp)
TGCGCTCAACGCTAGCTTGGAGATA
LOC_Os03g21700
Os.54916.1.S1_at--198--9491Chr03:12370365..12370389 (25 bp)
TCTCCTTTTTGTGTTCTCCGATGAT
LOC_Os03g21700
Target Sequence 
AGCGCCTCAAGTGGAACCGACAAGACGAGGAGCTCCGCCGGCAGCAACGCGCCACAGCCGGCGGCGCCGCAGAGCCCGGC
CGCTTCGCAGGCGAGCCGCAGCAACGTGTCTTCCAAGAAGAGCGCCACGATCTCATCGGGTGTCCTCGGACCAAGAAAGG
CGCGGGAGATGGTGGTGCCGGGCGACCACTCAGCACAATCCGGGGCTCTCGCCGTCGACGGCGATCGCCACGGCAGCTAC
GGCTTCCCGTTCGGCCCGGCGCCAGGCTACGTCGACCCCTTCTTCGCCGTCGGCGTGCCATTCGGAGCCGATCCTTACAT
GTACTACGGCGGCGCGCCTTACGGCTGTGGCGGCGCTGCTTACGGCTACTACGGCGGCGAGGATCGCCGTGACACGAAGA
GGACGCGCCTGCGATGATCGCACGTCACCGGTCAATTGTTGCCTGCTGGCTGCGCTCAACGCTAGCTTGGAGATATTTTC
TTCTCTCCTTTTTGTGTTCTCCGATGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis