Browse Element(s) Details


OsAffx.12977.1.S1_at

Description tigr:9631.m02166
TID=OsAffx.12977.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2167011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12977.1.S1_at--232--5232Chr03:14536472..14536496 (25 bp)
GAATACCAGGCAGGGCTTTTGCCCG
NONE
OsAffx.12977.1.S1_at--1107--10372Chr03:14536488..14536512 (25 bp)
TTTTGCCCGAGACTCCCTTGAAAGG
NONE
OsAffx.12977.1.S1_at--927--5712Chr03:14536498..14536522 (25 bp)
GACTCCCTTGAAAGGTGCAGGACCT
NONE
OsAffx.12977.1.S1_at--896--7772Chr10:3611369..3611838 (25 bp)
GGTGCAGGACCTCCAAGAAACCAGA
NONE
OsAffx.12977.1.S1_at--664--2751Chr03:12351087..12351111 (25 bp)
AAGAAACCAGAGCAGAGTGCTGAGA
LOC_Os03g21670
OsAffx.12977.1.S1_at--265--6113Chr03:14536539..14536563 (25 bp)
GAGTGCTGAGAGTTATCGTTGCCCA
NONE
OsAffx.12977.1.S1_at--323--516Chr03:14536553..14536577 (25 bp)
ATCGTTGCCCAGCTCATCGGCTAAA
NONE
OsAffx.12977.1.S1_at--848--491Chr03:12351044..12351068 (25 bp)
ATCGGCTAAACCTGATGCAGCAGCT
LOC_Os03g21670
OsAffx.12977.1.S1_at--875--9831Chr03:12351038..12351062 (25 bp)
TAAACCTGATGCAGCAGCTTCGACT
LOC_Os03g21670
OsAffx.12977.1.S1_at--414--10631Chr03:12351020..12351044 (25 bp)
TTCGACTCCGCCTAAGCACTAAAAC
LOC_Os03g21670
OsAffx.12977.1.S1_at--331--5111Chr03:12351005..12351029 (25 bp)
GCACTAAAACCCTAGCACTACAGAG
LOC_Os03g21670
Target Sequence 
GAATACCAGGCAGGGCTTTTGCCCGAGACTCCCTTGAAAGGTGCAGGACCTCCAAGAAACCAGAGCAGAGTGCTGAGAGT
TATCGTTGCCCAGCTCATCGGCTAAACCTGATGCAGCAGCTTCGACTCCGCCTAAGCACTAAAACCCTAGCACTACAGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12977.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis