Browse Element(s) Details


OsAffx.12975.1.S1_at

Description tigr:9631.m02164
TID=OsAffx.12975.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2165011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21600Os.7723.1.S1_at10/113+12313317..12316296expressed protein
LOC_Os03g21610OsAffx.12973.1.S1_at10/113+12317137..12318638hypothetical protein
LOC_Os03g21620Os.13521.1.S1_at11/113+12319013..12323097Serine/threonine-protein kinase AtPK19, putative, expressed
LOC_Os03g21630OsAffx.12974.1.S1_x_at11/113+12326392..12331918expressed protein
LOC_Os03g21630Os.27146.1.A1_at11/113+12326392..12331918expressed protein
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12975.1.S1_at--296--3491Chr03:12338447..12338471 (25 bp)
CATGGACAGGCCACGTTTGGCCGTC
LOC_Os03g21650
OsAffx.12975.1.S1_at--535--5651Chr03:12338443..12338467 (25 bp)
GACAGGCCACGTTTGGCCGTCGCGC
LOC_Os03g21650
OsAffx.12975.1.S1_at--166--7231Chr03:12338425..12338449 (25 bp)
GTCGCGCCGTTCACGGCGGCTGGCT
LOC_Os03g21650
OsAffx.12975.1.S1_at--289--9331Chr03:12338398..12338422 (25 bp)
TCGCGATCCGTCTCCGCGCACGGTG
LOC_Os03g21650
OsAffx.12975.1.S1_at--1155--5991Chr03:12338183..12338207 (25 bp)
GAGAGCTCCCGGGTGTTCAGCGCAC
LOC_Os03g21650
OsAffx.12975.1.S1_at--435--1591Chr03:12338180..12338204 (25 bp)
AGCTCCCGGGTGTTCAGCGCACTGA
LOC_Os03g21650
OsAffx.12975.1.S1_at--898--9291Chr03:12338177..12338201 (25 bp)
TCCCGGGTGTTCAGCGCACTGAAGC
LOC_Os03g21650
OsAffx.12975.1.S1_at--672--7751Chr03:12338172..12338196 (25 bp)
GGTGTTCAGCGCACTGAAGCACCGG
LOC_Os03g21650
OsAffx.12975.1.S1_at--469--8791Chr03:12338170..12338194 (25 bp)
TGTTCAGCGCACTGAAGCACCGGCA
LOC_Os03g21650
OsAffx.12975.1.S1_at--253--9671Chr03:12338167..12338191 (25 bp)
TCAGCGCACTGAAGCACCGGCACGA
LOC_Os03g21650
OsAffx.12975.1.S1_at--223--4591Chr03:12338164..12338188 (25 bp)
GCGCACTGAAGCACCGGCACGACGA
LOC_Os03g21650
Target Sequence 
CATGGACAGGCCACGTTTGGCCGTCGCGCCGTTCACGGCGGCTGGCTCGTCGCGATCCGTCTCCGCGCACGGTGCCGGTG
CGGCGGCGGGACGGAGCCGGTGGAGGCGCGGAAGGAGAGGGAAGGAGGACCGGGGAAGGGGGAGGAGGAGGAGGAGGAGG
CCGCGGCGGCGGAGGAGCTGGAGGTGCTGGAGGAGGAGGCCATGGGCGGTGGCGACGAGGGGCGCCGCCCCACGGACTAC
GACCGCCGCGCGCACATCTTCGAGGAGAGCTCCCGGGTGTTCAGCGCACTGAAGCACCGGCACGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12975.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis