Browse Element(s) Details


Os.8297.1.S1_at

Description gb:AK101595.1
DB_XREF= gi:32986804
TID=Os.8297.1
CNT=19
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8297 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033135B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033051F22, full insert sequence.
FL= gb:AK103647.1 gb:AK101595.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2169010/11Lung seven transmembrane receptor family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21640Os.50249.2.S1_at11/113+12333699..12337372expressed protein
LOC_Os03g21640Os.50249.1.S1_x_at11/113+12333699..12337372expressed protein
LOC_Os03g21650OsAffx.12975.1.S1_at11/113+12338091..12338555expressed protein
LOC_Os03g21660OsAffx.26070.1.S1_at11/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.3.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21660OsAffx.26070.2.S1_x_at9/113+12340960..12344726transposon protein, putative, unclassified, expressed
LOC_Os03g21670OsAffx.12977.1.S1_at11/113+12350971..12351207hypothetical protein
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8297.1.S1_at--1007--6631Chr03:12360470..12360494 (25 bp)
GTTGTCATCTTTAGTGCAGCTGTAC
LOC_Os03g21690
Os.8297.1.S1_at--775--1611Chr03:12360453..12360477 (25 bp)
AGCTGTACTCCTGGCTGAGTGCTAT
LOC_Os03g21690
Os.8297.1.S1_at--176--7311NONE
GTGCTATGTGAAGTACCGTTTCCCT
NONE
Os.8297.1.S1_at--763--3591Chr03:12359717..12359741 (25 bp)
CATTCATGGCAAGCTTACGACTTCT
LOC_Os03g21690
Os.8297.1.S1_at--813--1851Chr03:12359701..12359725 (25 bp)
ACGACTTCTGAAGCTTGCGTGCAGT
LOC_Os03g21690
Os.8297.1.S1_at--734--9011Chr03:12359682..12359706 (25 bp)
TGCAGTCCCAGTGTACAGGTCGTGA
LOC_Os03g21690
Os.8297.1.S1_at--497--7891Chr03:12359551..12359575 (25 bp)
GGTTACTTGCTGTAATTCCTGCGCA
LOC_Os03g21690
Os.8297.1.S1_at--112--4931Chr03:12359457..12359481 (25 bp)
GCATCCCCACGTAACGTTGGTATGA
LOC_Os03g21690
Os.8297.1.S1_at--30--7871Chr03:12359439..12359463 (25 bp)
GGTATGATGACCTCGTGCCAGTTGC
LOC_Os03g21690
Os.8297.1.S1_at--864--1231Chr03:12359420..12359444 (25 bp)
AGTTGCTTATGCATTGCTCGCACGT
LOC_Os03g21690
Os.8297.1.S1_at--404--6971Chr03:12359324..12359348 (25 bp)
GTAGCTGCATGGTTATCACGAGGTA
LOC_Os03g21690
Target Sequence 
GTTGTCATCTTTAGTGCAGCTGTACTCCTGGCTGAGTGCTATGTGAAGTACCGTTTCCCTCTGCATTCATGGCAAGCTTA
CGACTTCTGAAGCTTGCGTGCAGTCCCAGTGTACAGGTCGTGACTTTGTATGGAAGGATTTGACTTCTATAGAATTTTAC
TCAATCCGTTGATGACTATCCAATACAAAAATGTGCGGGAAATAAACAATGACTTGGAGAGCGTGCTGGGGTTACTTGCT
GTAATTCCTGCGCATGGTGTGGCGTGTGTAGTAGACTCGTAGGTCTTGTTTGGTAGAAGCGCACATTGTTAAACACATTG
ACTGCATCCCCACGTAACGTTGGTATGATGACCTCGTGCCAGTTGCTTATGCATTGCTCGCACGTATGAGATATGGAATG
ATTTAATTCTGGGTGTTTATTCAAGGTTCACCAAACCGTTTTGAGTGAGTTTGGTGGTAGCTGCATGGTTATCACGAGGT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8297.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis