Browse Element(s) Details


OsAffx.26070.3.S1_x_at

Description tigr:9632.m01786
TID=OsAffx.26070.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1964011/11hypothetical protein
LOC_Os08g3004011/11transposon protein, putative, unclassified
LOC_Os03g216609/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g19600NANA4+10895104..10896177retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19610Os.53142.1.S1_at3/114+10896493..10901060retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19620OsAffx.30891.1.S1_x_at3/114+10903219..10910511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19620Os.27980.1.S1_at1/114+10903219..10910511retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19630OsAffx.13878.1.S1_at11/114+10914605..10915524hypothetical protein
LOC_Os04g19630Os.7975.1.S1_x_at1/114+10914605..10915524hypothetical protein
LOC_Os04g19640OsAffx.26070.3.S1_x_at11/114+10920531..10922960hypothetical protein
LOC_Os04g19640OsAffx.26070.2.S1_x_at8/114+10920531..10922960hypothetical protein
LOC_Os04g19650NANA4+10941028..10941822retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g19660NANA4+10942094..10946515retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26070.3.S1_x_at--670--9993Chr08:18329787..18329811 (25 bp)
TAGCGCACGACATGGCAGGACAATC
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--1037--8493Chr08:18329799..18329823 (25 bp)
TGGCAGGACAATCTTCACATGAACA
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--767--3433Chr08:18330021..18330045 (25 bp)
CAGATCTCCGAGTTTATGACCATGG
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--1137--5373Chr08:18330045..18330069 (25 bp)
GAAGAAGATGTTGCCGGCGCTATCG
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--389--8393Chr08:18330060..18330084 (25 bp)
GGCGCTATCGATGCCAACGCTAATG
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--185--7752Chr08:18330084..18330108 (25 bp)
GGTGATGACAACACACTCTGTCGCA
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--118--2192Chr08:18330096..18330120 (25 bp)
ACACTCTGTCGCATAGTACCTGAAG
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--99--5133Chr08:18330243..18330267 (25 bp)
GCACAAACTTTGATCTTGCCTCAAG
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--289--8233Chr08:18332577..18332601 (25 bp)
GGCAATCCTCGACAATGGCTGCATA
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--1096--7853Chr08:18332607..18332631 (25 bp)
GGTTTGGGCAATCCTCGACCATGGA
LOC_Os08g30040
OsAffx.26070.3.S1_x_at--759--7973Chr08:18332629..18332653 (25 bp)
GGATGCTCCTTTAATCCAAGGCGGA
LOC_Os08g30040
Target Sequence 
TAGCGCACGACATGGCAGGACAATCTTCACATGAACACGATGTAATCGTTGGGGATCGTGGAGCCGATGGCAAGCAGAGA
ACGCAGATCTCCGAGTTTATGACCATGGAAGAAGATGTTGCCGGCGCTATCGATGCCAACGCTAATGGTGATGACAACAC
ACTCTGTCGCATAGTACCTGAAGAGATGGCAGATAAAGCACCAAATCAGGCCAATGATAAAGTTGCACAAACTTTGATCT
TGCCTCAAGTTGGAATGGCTTTTGATTCAAAGCAGAAAGCATATTTTGTATGTTTGAACTATATAGGAGAAGATCTAAAT
AATGCATCAGAAGATGAAGATGAAGATGTTGGTGATGTGTGTGGGCAATCTTCGACCATGGATGCAAATGATGTGTGTGG
GCAATCCTCGACCATGGCTGCATATGATGTGTATGGGCAATCCTCGACAATGGCTGCATATGATGGGTTTGGGCAATCCT
CGACCATGGATGCTCCTTTAATCCAAGGCGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26070.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis