Browse Element(s) Details


OsAffx.30891.1.S1_x_at

Description tigr:9639.m00837
TID=OsAffx.30891.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g088808/11hypothetical protein
LOC_Os11g087406/11hypothetical protein
LOC_Os04g196203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g062703/11retrotransposon protein, putative, unclassified
LOC_Os02g216203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g221603/11retrotransposon protein, putative, unclassified
LOC_Os07g181103/11hypothetical protein
LOC_Os06g472202/11expressed protein
LOC_Os10g211602/11hypothetical protein
LOC_Os11g184902/11hypothetical protein
LOC_Os10g031902/11hypothetical protein
LOC_Os08g236202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g281202/11hypothetical protein
LOC_Os12g181901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g139501/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g251201/11hypothetical protein
LOC_Os01g293201/11retrotransposon protein, putative, unclassified
LOC_Os11g443701/11hypothetical protein
LOC_Os10g406201/11expressed protein
LOC_Os08g381501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08830OsAffx.18753.3.S1_x_at4/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.18753.3.S1_at3/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.22433.3.S1_s_at2/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08840OsAffx.30892.1.S1_at10/1111+4679452..4680615hypothetical protein
LOC_Os11g08850NANA11+4685094..4686462retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g08860Os.8169.1.S1_at10/1111+4687378..4688578expressed protein
LOC_Os11g08870Os.53818.1.S1_at7/1111+4694022..4699515retrotransposon protein, putative, unclassified
LOC_Os11g08880OsAffx.30891.1.S1_at11/1111+4701168..4701798hypothetical protein
LOC_Os11g08880OsAffx.30891.1.S1_x_at8/1111+4701168..4701798hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_at3/1111+4705407..4706564hypothetical protein
LOC_Os11g08889OsAffx.1196.1.S1_x_at1/1111+4705407..4706564hypothetical protein
LOC_Os11g08900OsAffx.7657.1.S1_x_at1/1111+4707510..4708568hypothetical protein
LOC_Os11g08909Os.9658.1.S1_at10/1111+4710246..4711282expressed protein
LOC_Os11g08909OsAffx.18753.3.S1_x_at1/1111+4710246..4711282expressed protein
LOC_Os11g08918OsAffx.18753.1.S1_at11/1111+4711866..4714362hypothetical protein
LOC_Os11g08918OsAffx.19202.1.S1_at1/1111+4711866..4714362hypothetical protein
LOC_Os11g08930Os.8169.1.S1_at10/1111+4719782..4721025expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30891.1.S1_x_at--825--993Chr11:4701214..4701238 (25 bp)
AGGAGGCGGCGCACCGCGCGCGAAT
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--545--4572Chr11:4701231..4701255 (25 bp)
GCGCGAATGCTCACCGCGCGTCTAT
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--1074--9672Chr11:4701241..4701265 (25 bp)
TCACCGCGCGTCTATTCCAGTGGCG
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--678--7152Chr11:4701250..4701274 (25 bp)
GTCTATTCCAGTGGCGCTTTGCCAA
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--778--4552Chr11:4701263..4701287 (25 bp)
GCGCTTTGCCAACGCCCGCATGGAG
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--744--2593Chr11:4701273..4701297 (25 bp)
AACGCCCGCATGGAGAAGGCCATGG
LOC_Os11g08880
OsAffx.30891.1.S1_x_at--593--1017287Chr12:11091438..11091462 (25 bp)
TATACCATTGTAGCATTTCACCCGA
NONE
OsAffx.30891.1.S1_x_at--84--1033296Chr12:5261123..5261146 (24 bp)
TTTCACCCGAGAGTATTCCAAGGGA
NONE
OsAffx.30891.1.S1_x_at--820--417262Chr12:18512423..18512546 (25 bp)
CCCGAGAGTATTCCAAGGGATATAC
NONE
OsAffx.30891.1.S1_x_at--769--10333Chr11:4701887..4701911 (25 bp)
TTTATACAGGTTCGGTCCCCTGAAT
NONE
OsAffx.30891.1.S1_x_at--183--9873Chr11:4701891..4701915 (25 bp)
TACAGGTTCGGTCCCCTGAATTGTC
NONE
Target Sequence 
AGGAGGCGGCGCACCGCGCGCGAATGCTCACCGCGCGTCTATTCCAGTGGCGCTTTGCCAACGCCCGCATGGAGAAGGCC
ATGGCCCGCGCCGCCATCACCGCCGAGAGTTCATCCNCAANGCGCANNNATATACCATTGTAGCATTTCACCCGAGAGTA
TTCCAAGGGATATACANGAGACTGAGGTAAAAGAGATGNAGACAGAGATTTTTATACAGGTTCGGTCCCCTGAATTGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30891.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis