Browse Element(s) Details


Os.53818.1.S1_at

Description gb:AK100252.1
DB_XREF= gi:32985461
TID=Os.53818.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53818 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061A07, full insert sequence.
FL= gb:AK100252.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0875011/11Pectinesterase family protein, expressed
LOC_Os11g088707/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g08670Os.17282.1.S1_at10/1111+4621013..4627105ATP-NAD kinase family protein, expressed
LOC_Os11g08680Os.8169.1.S1_at3/1111+4629965..4630519hypothetical protein
LOC_Os11g08689OsAffx.30486.1.S1_at1/1111+4633832..4635452NA
LOC_Os11g08698OsAffx.18753.1.S1_at11/1111+4636454..4638950hypothetical protein
LOC_Os11g08698OsAffx.19202.1.S1_at1/1111+4636454..4638950hypothetical protein
LOC_Os11g08707Os.9658.1.S1_at11/1111+4639444..4640585expressed protein
LOC_Os11g08707OsAffx.18753.3.S1_x_at1/1111+4639444..4640585expressed protein
LOC_Os11g08720OsAffx.7657.1.S1_x_at1/1111+4642248..4643306hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_at3/1111+4644252..4645409hypothetical protein
LOC_Os11g08729OsAffx.1196.1.S1_x_at1/1111+4644252..4645409hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_at11/1111+4649403..4649678hypothetical protein
LOC_Os11g08740OsAffx.30891.1.S1_x_at6/1111+4649403..4649678hypothetical protein
LOC_Os11g08750Os.53818.1.S1_at11/1111+4651264..4653407Pectinesterase family protein, expressed
LOC_Os11g08760Os.9658.1.S1_at5/1111+4654891..4658106Pectinesterase family protein
LOC_Os11g08770OsAffx.25936.7.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.1.S1_s_at11/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.2.S1_x_at4/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08770OsAffx.25936.5.S1_x_at2/1111+4659597..4662635transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08780NANA11+4664225..4664440hypothetical protein
LOC_Os11g08790Os.19439.2.S1_at11/1111+4665104..4666395transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08800OsAffx.17922.1.S1_x_at5/1111+4666677..4668998hypothetical protein
LOC_Os11g08810Os.10827.1.S1_x_at11/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08810Os.46055.2.S1_x_at5/1111+4669674..4672961transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g08820OsAffx.18753.3.S1_x_at1/1111+4674852..4675538hypothetical protein
LOC_Os11g08830OsAffx.18753.3.S1_x_at4/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.18753.3.S1_at3/1111+4676567..4677510kelch repeat-containing F-box family protein, putative
LOC_Os11g08830OsAffx.22433.3.S1_s_at2/1111+4676567..4677510kelch repeat-containing F-box family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0030599molecular_functionpectinesterase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53818.1.S1_at--1068--9212Chr11:4652882..4652906 (25 bp)
TCCAGGGTGGTTTTCATGGGCTGTT
LOC_Os11g08750
Os.53818.1.S1_at--826--8652Chr11:4652898..4652922 (25 bp)
TGGGCTGTTTCATGAGCGACATCAT
LOC_Os11g08750
Os.53818.1.S1_at--1114--8912Chr11:4652910..4652934 (25 bp)
TGAGCGACATCATCAACCCTGACGG
LOC_Os11g08750
Os.53818.1.S1_at--1081--4272Chr11:4652927..4652951 (25 bp)
CCTGACGGCTGGGTTCACTGGAACA
LOC_Os11g08750
Os.53818.1.S1_at--318--1933Chr11:4658093..4658117 (25 bp)
ACGGTCTCATCTAGTTACACTCTTA
NONE
Os.53818.1.S1_at--243--10493Chr11:4658107..4658131 (25 bp)
TTACACTCTTACACCATCATTGCAT
NONE
Os.53818.1.S1_at--198--393Chr11:4658138..4658162 (25 bp)
ATCACATGCTGTGTACTGGAGTATT
NONE
Os.53818.1.S1_at--972--3191Chr11:4653262..4653286 (25 bp)
CAATGTCCCTTGTGTATGTCTGTAA
LOC_Os11g08750
Os.53818.1.S1_at--1133--1953Chr11:4708700..4708724 (25 bp)
ACTGTTTGCATATGTACGTACCTTA
NONE
Os.53818.1.S1_at--622--6771Chr11:4653333..4653357 (25 bp)
GTTAGTACGTACACCCATTGTATGT
LOC_Os11g08750
Os.53818.1.S1_at--299--5874Chr11:4708784..4708808 (25 bp)
GAGCCATGTGCTCGTGCACTTGTAT
NONE
Target Sequence 
TCCAGGGTGGTTTTCATGGGCTGTTTCATGAGCGACATCATCAACCCTGACGGCTGGGTTCACTGGAACAAGGCAACACC
TGTGGAGGAGACGACCAGGACAGTGGAGTACCTGGAGTATGGCAACAAAGGCGCTGGGGCAGAGACGGCCGACCGTGTGA
AGTGGAAGGGCGTCCGGGTGATCACCGAGGCGGAGGCCAACCGTTTCACCGTTGATCACTTCATCAACGGTAACCAGTGG
TTGCCCAACTTGGTCAACGGCGAGCAGATCAACTACACCCACGGTCTCATCTAGTTACACTCTTACACCATCATTGCATA
CATATATCACATGCTGTGTACTGGAGTATTGTATATTTGTATTGTATTGTACCGTATCAACAATGTCCCTTGTGTATGTC
TGTAACTATATACTCTACTGTTTGCATATGTACGTACCTTATATTGTATTTGTTAGTACGTACACCCATTGTATGTATAT
ATAAATAAATAAAGATGCATGAGCCATGTGCTCGTGCACTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53818.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis