Browse Element(s) Details


OsAffx.19202.1.S1_at

Description tigr:9639.m03334
TID=OsAffx.19202.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3689010/11hypothetical protein
LOC_Os11g086981/11hypothetical protein
LOC_Os11g089181/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g36850NANA11+21238490..21239782retrotransposon protein, putative, unclassified
LOC_Os11g36860NANA11+21240290..21243225retrotransposon protein, putative, unclassified
LOC_Os11g36870NANA11+21244733..21249981retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.4222.1.S1_at3/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36880OsAffx.21100.1.S1_at2/1111+21252521..21258771retrotransposon protein, putative, unclassified
LOC_Os11g36890OsAffx.19202.1.S1_at10/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.14983.1.S1_a_at2/1111+21259914..21262345hypothetical protein
LOC_Os11g36890Os.51591.1.S1_at1/1111+21259914..21262345hypothetical protein
LOC_Os11g36900OsAffx.31335.1.S1_at11/1111+21264128..21264409hypothetical protein
LOC_Os11g36910OsAffx.19203.1.S1_at11/1111+21267182..21267544hypothetical protein
LOC_Os11g36920NANA11+21278734..21280743hypothetical protein
LOC_Os11g36930OsAffx.7318.1.S1_at11/1111+21282341..21287544hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
GO:0005634cellular_componentnucleus
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19202.1.S1_at--118--7091Chr11:21261529..21261553 (25 bp)
GTCAAGATTTCACTCAGCGGGAATA
LOC_Os11g36890
OsAffx.19202.1.S1_at--1032--2211Chr11:21261460..21261483 (24 bp)
ACAAGTCCGAGTGGCTACTCGATGT
LOC_Os11g36890
OsAffx.19202.1.S1_at--554--8311NONE
GGCTACTCGATGTTTTTACCACAAG
NONE
OsAffx.19202.1.S1_at--520--10411Chr11:21261099..21261123 (25 bp)
TTACCACAAGACCAATTCAACTATT
LOC_Os11g36890
OsAffx.19202.1.S1_at--961--10771Chr11:21261054..21261078 (25 bp)
TTGGTGTTCCTGATTTACCCGTTCA
LOC_Os11g36890
OsAffx.19202.1.S1_at--561--4971Chr11:21261029..21261053 (25 bp)
GCATCATCAGCTTATATACAGGAGT
LOC_Os11g36890
OsAffx.19202.1.S1_at--638--5351Chr11:21260728..21261020 (25 bp)
GAAGAACCTTGAAGTGGCCAATTTA
LOC_Os11g36890
OsAffx.19202.1.S1_at--359--8191Chr11:21260699..21260723 (25 bp)
GGAAGAGGCTGCCATGGCTAAAATA
LOC_Os11g36890
OsAffx.19202.1.S1_at--788--7611Chr11:21260594..21260618 (25 bp)
GGGAAGATTCAAAGCGCCCTATCGA
LOC_Os11g36890
OsAffx.19202.1.S1_at--666--1651Chr11:21260585..21260606 (22 bp)
AGCGCCCTATCGACTATCGAGTTAA
LOC_Os11g36890
OsAffx.19202.1.S1_at--1141--496Chr11:4713186..4713205 (20 bp)
ATCGAGTTAAGCCACGTCTTGCCGC
LOC_Os11g08918
Target Sequence 
GTCAAGATTTCACTCAGCGGGAATACACCCGAACACATCATCCGCATCACAAGGAAGATCGATACCAAGAACAAGTCCGA
GTGGCTACTCGATGTTTTTACCACAAGACCAATTCAACTATTGGAAGAGACTCAAAAAGCTGTTGGTGTTCCTGATTTAC
CCGTTCAGCATCATCAGCTTATATACAGGAGTAAGGAATTGAAGAACCTTGAAGTGGCCAATTTAATGAGGAAGAGGCTG
CCATGGCTAAAATATGAAATGAAGGAGGAGGAATTGATAGAAGCACAGGAGCAGGAAAAAACAATGAAGAAGAAAATGGA
AATAGCCAAAATCTGGGAAGATTCAAAGCGCCCTATCGACTATCGAGTTAAGCCACGTCTTGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19202.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis