Browse Element(s) Details


OsAffx.4222.1.S1_at

Description tigr:9633.m00045
TID=OsAffx.4222.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0139011/11hypothetical protein
LOC_Os11g368803/11retrotransposon protein, putative, unclassified
LOC_Os07g239902/11tetratricopeptide repeat, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed
LOC_Os05g01444OsAffx.26677.1.S1_x_at11/115+234821..236460Leucine Rich Repeat family protein, expressed
LOC_Os05g01444Os.55730.1.S1_at11/115+234821..236460Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4222.1.S1_at--420--9911Chr05:210679..210703 (25 bp)
TACTCTATTCTTTCGGCCGGTAGAA
LOC_Os05g01390
OsAffx.4222.1.S1_at--1096--1251Chr05:210636..210660 (25 bp)
AGATTATCTGGAAATCCCACGCACC
LOC_Os05g01390
OsAffx.4222.1.S1_at--1--7251Chr05:210580..210604 (25 bp)
GTCCGCAATGCCTATTTAACAGCTG
LOC_Os05g01390
OsAffx.4222.1.S1_at--843--5392Chr07:5259341..5259365 (25 bp)
GAAGCTTGCACCAATTTGTCACCTT
NONE
OsAffx.4222.1.S1_at--1018--9033Chr02:33168756..33168780 (25 bp)
TGCACCTTCTCGCAGCAAGTTTGGG
NONE
OsAffx.4222.1.S1_at--692--991Chr05:210438..210462 (25 bp)
AGGTTCAGGCTCGTTTGACCCTCTA
LOC_Os05g01390
OsAffx.4222.1.S1_at--958--4773Chr02:33168849..33168873 (25 bp)
GCTGCCCGGCAAACTGTTGCGAAGA
NONE
OsAffx.4222.1.S1_at--838--511Chr05:210349..210373 (25 bp)
ATCGATCGCAAGACGTTTGACGCCG
LOC_Os05g01390
OsAffx.4222.1.S1_at--815--5032Chr07:13588933..13588952 (20 bp)
GCAGTTGTGTGCGACCATGTGTGAT
LOC_Os07g23990
OsAffx.4222.1.S1_at--949--3075Chr07:13588969..13588993 (25 bp)
AATCAGCAGGGCTAGTTACCTCGTT
LOC_Os07g23990
OsAffx.4222.1.S1_at--966--6773Chr02:33169029..33169053 (25 bp)
GTTACCTCGTTGAATGTTGCTGCAG
NONE
Target Sequence 
TACTCTATTCTTTCGGCCGGTAGAACATCCTGCCCGCTCGGCAAGATTATCTGGAAATCCCACGCACCAGCAAGATGCAA
GTTCTTCATGTTCCTTGCGGTCCGCAATGCCTATTTAACAGCTGATAACCTGCAGCGCCGAGGCTGGAAGCTTGCACCAA
TTTGTCACCTTTGTTCTAAGGATGGAGAGTCCTGCCAACACATCTTCCAAGCCTGCACCTTCTCGCAGCAAGTTTGGGTG
CAGGTTCAGGCTCGTTTGACCCTCTACTGCTCGCCGCCGTCCTCGGACTTTGCCGGCTGGTGGCTCGCTGCCCGGCAAAC
TGTTGCGAAGATCGATCGCAAGACGTTTGACGCCGGGGTCATCCTCGTTACATGGTTGATTTGGAAAGAGCGCAACGCAC
GGGTTTTCGAGGGAACGGCCTCGTCGGTCACGCAGTTGTGTGCGACCATGTGTGATGAATGGGAAACTTGGAAATCAGCA
GGGCTAGTTACCTCGTTGAATGTTGCTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4222.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis