Browse Element(s) Details


OsAffx.26676.1.S1_at

Description tigr:9633.m00043
TID=OsAffx.26676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polygalacturonase-inhibiting protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0137011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01320Os.5620.1.S1_at11/115+180001..183757expressed protein
LOC_Os05g01320Os.5620.2.S1_s_at5/115+180001..183757expressed protein
LOC_Os05g01320Os.46612.1.S1_x_at1/115+180001..183757expressed protein
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26676.1.S1_at--698--8511Chr05:205813..205837 (25 bp)
TGGACCTGTCGCGAAACGGCTTCGT
LOC_Os05g01370
OsAffx.26676.1.S1_at--216--7211Chr05:205820..205844 (25 bp)
GTCGCGAAACGGCTTCGTCTTCAAC
LOC_Os05g01370
OsAffx.26676.1.S1_at--1027--4131Chr05:205822..205846 (25 bp)
CGCGAAACGGCTTCGTCTTCAACAT
LOC_Os05g01370
OsAffx.26676.1.S1_at--859--1931Chr05:205828..205852 (25 bp)
ACGGCTTCGTCTTCAACATGTCCGG
LOC_Os05g01370
OsAffx.26676.1.S1_at--1075--10611Chr05:205833..205857 (25 bp)
TTCGTCTTCAACATGTCCGGCGTGG
LOC_Os05g01370
OsAffx.26676.1.S1_at--244--4011Chr05:205835..205859 (25 bp)
CGTCTTCAACATGTCCGGCGTGGAG
LOC_Os05g01370
OsAffx.26676.1.S1_at--946--9551Chr05:205837..205861 (25 bp)
TCTTCAACATGTCCGGCGTGGAGTT
LOC_Os05g01370
OsAffx.26676.1.S1_at--356--1371Chr05:205870..205894 (25 bp)
AGACGTACTACGTGGACGTGAGCCA
LOC_Os05g01370
OsAffx.26676.1.S1_at--802--1891Chr05:205872..205896 (25 bp)
ACGTACTACGTGGACGTGAGCCACA
LOC_Os05g01370
OsAffx.26676.1.S1_at--569--4451Chr05:206010..206034 (25 bp)
GCCTACTGCTACCAACACAACAAAT
LOC_Os05g01370
OsAffx.26676.1.S1_at--547--3271Chr05:206022..206046 (25 bp)
CAACACAACAAATGCCTCTGCGGCG
LOC_Os05g01370
Target Sequence 
TGGACCTGTCGCGAAACGGCTTCGTCTTCAACATGTCCGGCGTGGAGTTCGCGGAGGAGACGTACTACGTGGACGTGAGC
CACAACGCCATCCGCGGGGGGATCCCGGCGCAGGTGGCCAACCTCACCAACCTGCAGACGTTCAACGTCAGCTACAACAA
GATGTGCGGCGCGGTGCCCGCCATGCCCAGGTTCGACGCCTACTGCTACCAACACAACAAATGCCTCTGCGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis