Browse Element(s) Details


OsAffx.4221.1.S1_x_at

Description tigr:9633.m00044
TID=OsAffx.4221.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=polygalacturonase inhibitor protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0138011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01330OsAffx.20082.1.S1_at8/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_x_at3/115+185545..187735expressed protein
LOC_Os05g01330Os.25093.1.A1_at2/115+185545..187735expressed protein
LOC_Os05g01350OsAffx.31590.1.S1_at2/115+191915..195460retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g01360Os.54311.1.S1_at11/115+197043..204340expressed protein
LOC_Os05g01370OsAffx.26676.1.S1_at11/115+205050..206078Leucine Rich Repeat family protein, expressed
LOC_Os05g01380OsAffx.4221.1.S1_x_at11/115+208835..209818Leucine Rich Repeat family protein, expressed
LOC_Os05g01390OsAffx.4222.1.S1_at11/115+210161..210799hypothetical protein
LOC_Os05g01400NANA5+212135..218060retrotransposon protein, putative, unclassified
LOC_Os05g01410Os.28943.1.S1_x_at4/115+218685..221218retrotransposon protein, putative, unclassified
LOC_Os05g01420OsAffx.21100.1.S1_at3/115+223134..226207retrotransposon protein, putative, unclassified
LOC_Os05g01430OsAffx.26677.1.S1_x_at3/115+226442..227461Leucine Rich Repeat family protein
LOC_Os05g01440NANA5+229512..234632phosphoribosylformylglycinamidine synthase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007165biological_processsignal transduction
GO:0009411biological_processresponse to UV
GO:0009650biological_processUV protection
GO:0042221biological_processresponse to chemical stimulus
GO:0042493biological_processresponse to drug
GO:0009507cellular_componentchloroplast
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4221.1.S1_x_at--139--9671Chr05:209391..209415 (25 bp)
TCAGCGGCATCGACATCAGCCGCAA
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--551--3931Chr05:209439..209463 (25 bp)
CGGCGCTCTTCAGCAAGCTCAACAC
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--597--2691Chr05:209453..209477 (25 bp)
AAGCTCAACACCACGCAGCAGGGCG
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--1018--4551Chr05:209478..209502 (25 bp)
GCGCCTACCTGAGGCTGTCGCGGAA
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--1003--3711Chr05:209482..209506 (25 bp)
CTACCTGAGGCTGTCGCGGAACAAC
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--130--1771Chr05:209484..209508 (25 bp)
ACCTGAGGCTGTCGCGGAACAACCT
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--701--10631Chr05:209582..209606 (25 bp)
TTCGACATGACCGGGCTGCGGCTGC
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--542--7711Chr05:209613..209637 (25 bp)
GGGTGAGCTCGCTGGACCTCAGCCA
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--483--1691Chr05:209633..209657 (25 bp)
AGCCACAACATGCTGTACGGCGGCG
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--550--1511Chr05:209681..209705 (25 bp)
AGCAGCCTGCAGGACTTCAACGTCA
LOC_Os05g01380
OsAffx.4221.1.S1_x_at--133--4471Chr05:209685..209709 (25 bp)
GCCTGCAGGACTTCAACGTCAGCTA
LOC_Os05g01380
Target Sequence 
TCAGCGGCATCGACATCAGCCGCAACCGCCTCACCGGCCCCCTGCCGCCGGCGCTCTTCAGCAAGCTCAACACCACGCAG
CAGGGCGGCGCCTACCTGAGGCTGTCGCGGAACAACCTCACCGGCGGCATCCCGGCCGAGTACGGCGGCGTGGCGTTCGA
GGTGATGGACCTGTCGCGCAACGCGCTGAGCTTCGACATGACCGGGCTGCGGCTGCAGGAAGGGGTGAGCTCGCTGGACC
TCAGCCACAACATGCTGTACGGCGGCGTGCCGGCGCAGGTGGCCGGGCTGAGCAGCCTGCAGGACTTCAACGTCAGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4221.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis