Browse Element(s) Details


Os.25093.1.A1_x_at

Description gb:AK062659.1
DB_XREF= gi:32972677
TID=Os.25093.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25093 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-F03, full insert sequence.
FL= gb:AK062659.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g417604/11expressed protein
LOC_Os05g013303/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41730Os.2741.4.S1_x_at10/1112+25812587..25818652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g41740NANA12+25828413..25829279hypothetical protein
LOC_Os12g41750OsAffx.13041.2.A1_at10/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41750Os.54015.1.S1_at1/1112+25833488..25836300transposon protein, putative, unclassified
LOC_Os12g41760Os.25093.1.A1_x_at4/1112+25839963..25841948expressed protein
LOC_Os12g41760OsAffx.20082.1.S1_at1/1112+25839963..25841948expressed protein
LOC_Os12g41770OsAffx.32143.1.S1_at11/1112+25844359..25844760hypothetical protein
LOC_Os12g41780Os.33273.1.S1_at11/1112+25849499..25852311glycosyl transferase family 17 protein, putative, expressed
LOC_Os12g41790OsAffx.32144.1.S1_at11/1112+25852605..25853637Gamma-thionins family protein
LOC_Os12g41800Os.8970.1.S1_at11/1112+25855260..25859382VTC2, putative, expressed
LOC_Os12g41810Os.52966.1.S1_at11/1112+25860719..25864435WPP domain associated protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25093.1.A1_x_at--759--3571Chr12:25840095..25840119 (25 bp)
CATAGTGGTGGCTGGAGGACTCTCT
LOC_Os12g41760
Os.25093.1.A1_x_at--608--10611Chr12:25840067..25840091 (25 bp)
TTCGTCCTTGGCGTGTATTACTACA
LOC_Os12g41760
Os.25093.1.A1_x_at--351--692Chr12:25840018..25840042 (25 bp)
ATGAGCTGCAGGTCGCCATTGATAA
LOC_Os12g41760
Os.25093.1.A1_x_at--233--6351Chr12:25839971..25839995 (25 bp)
GATGCTGGGAACTCATCCGCCGCGG
LOC_Os12g41760
Os.25093.1.A1_x_at--574--9291Chr12:25839956..25839980 (25 bp)
TCCGCCGCGGGATCCTAAGAACAGG
NONE
Os.25093.1.A1_x_at--993--2472Chr12:25839937..25839961 (25 bp)
AACAGGGTTTAGAATTGGCTCCATA
NONE
Os.25093.1.A1_x_at--841--251Chr12:25839915..25839939 (25 bp)
ATATCCGCCTCTATACTGAACTGTG
NONE
Os.25093.1.A1_x_at--451--9912Chr12:25839902..25839926 (25 bp)
TACTGAACTGTGGTTTTGTACAATA
NONE
Os.25093.1.A1_x_at--1061--7911Chr12:25839863..25839887 (25 bp)
GGTTGTGCTTATGCTTTGACGTTAA
NONE
Os.25093.1.A1_x_at--217--1631Chr12:25839777..25839801 (25 bp)
AGCGTTTTGGACTGGTGCTCGCACG
NONE
Os.25093.1.A1_x_at--406--3931Chr12:25839752..25839776 (25 bp)
CGGCGCTATCCATTTTTATTCACAT
NONE
Target Sequence 
CATAGTGGTGGCTGGAGGACTCTCTGCTTTCGTCCTTGGCGTGTATTACTACACCATGAGAGCGGTGGGAGGCACAGATG
AGCTGCAGGTCGCCATTGATAAGTTTGAAGGCATGAAGAAAAAGGATGCTGGGAACTCATCCGCCGCGGGATCCTAAGAA
CAGGGTTTAGAATTGGCTCCATATCCGCCTCTATACTGAACTGTGGTTTTGTACAATAATGGCTCAATACTAGGTTGTGC
TTATGCTTTGACGTTAAGCTGGANNANTTTTNNNCTGAATCGACTATATTAAAANNNNNNNNNNNNNGCNGGGCTGAGAG
CGTTTTGGACTGGTGCTCGCACGCGGCGCTATCCATTTTTATTCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25093.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis