Browse Element(s) Details


Os.2741.4.S1_x_at

Description gb:NM_196472.1
DB_XREF= gi:37534303
TID=Os.2741.4
CNT=24
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2741 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative rice tungro bacilliform virus; reverse transcriptase (OSJNBa0045B21.5), mRNA.
PROD=putative rice tungro bacilliform virus; reversetranscriptase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2726011/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g2994011/11hypothetical protein
LOC_Os09g0260011/11hypothetical protein
LOC_Os02g1563011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g4173010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g4080410/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g172709/11hypothetical protein
LOC_Os08g325808/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g302708/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g088808/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g187307/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g187707/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g188406/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g218606/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g307106/11hypothetical protein
LOC_Os08g182104/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g186703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g375402/11hypothetical protein
LOC_Os08g430302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g427202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g102702/11hypothetical protein
LOC_Os06g041102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g181641/11hypothetical protein
LOC_Os04g356401/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27230Os.12036.1.S1_at11/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27230Os.12036.2.S1_x_at7/1110+14025606..14031002endonuclease/exonuclease/phosphatase family protein, putative, expressed
LOC_Os10g27240OsAffx.29313.1.S1_at1/1110+14034536..14037925transposon protein, putative, Mutator sub-class
LOC_Os10g27250NANA10+14038443..14043050hypothetical protein
LOC_Os10g27260Os.2741.4.S1_x_at11/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.47463.1.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.14491.2.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260OsAffx.8513.1.S1_s_at1/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27270NANA10+14063523..14063939hypothetical protein
LOC_Os10g27280Os.46809.1.S1_at11/1110+14067758..14069259Thaumatin family protein, expressed
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2741.4.S1_x_at--500--22912Chr12:25818061..25818085 (25 bp)
AAATGGGTCATTAATGCCTGCCAAT
LOC_Os12g41730
Os.2741.4.S1_x_at--461--97513Chr12:25818072..25818096 (25 bp)
TAATGCCTGCCAATGAAGATCATGA
LOC_Os12g41730
Os.2741.4.S1_x_at--628--5319Chr12:25818095..25818119 (25 bp)
GAAGTAATCCAACAAAAGCCTATAT
LOC_Os12g41730
Os.2741.4.S1_x_at--759--65115Chr12:25818230..25818254 (25 bp)
GATATTGATGAAGCATTAAGCCAAG
LOC_Os12g41730
Os.2741.4.S1_x_at--992--104124Chr12:25818277..25818301 (25 bp)
TTATTATCTAGAGCCTGCTGCAAAA
LOC_Os12g41730
Os.2741.4.S1_x_at--328--58723Chr12:25818287..25818311 (25 bp)
GAGCCTGCTGCAAAAGAATATATTC
LOC_Os12g41730
Os.2741.4.S1_x_at--81--56918Chr12:17865679..17865703 (25 bp)
GACTTCAGAAATACCCATTAAGATG
LOC_Os12g29940
Os.2741.4.S1_x_at--613--24119Chr12:25818391..25818415 (25 bp)
AAAACCCACATACAAGGAATGCTTA
LOC_Os12g41730
Os.2741.4.S1_x_at--273--22516Chr12:25818470..25818494 (25 bp)
AAATTTGAAGAAGCCTCCCCACAGT
LOC_Os12g41730
Os.2741.4.S1_x_at--50--14314Chr12:25818478..25818502 (25 bp)
AGAAGCCTCCCCACAGTTAAAGAAG
LOC_Os12g41730
Os.2741.4.S1_x_at--726--53319Chr12:25818590..25818614 (25 bp)
GAAGTTTCTTTTTCTGATTTGGACA
LOC_Os12g41730
Target Sequence 
AAATGGGTCATTAATGCCTGCCAATGAAGATCATGAAGTAATCCAACAAAAGCCTATATATGTAGTATTTGATGGAAAGC
TCCCTGGGGTCTACATTTCTTTTGAAGAAATTGTGGCTCAAAAAATAGATGCTAAATTAATGGGAGGAATATCTTGGAAG
AAATATAAGGATATTGATGAAGCATTAAGCCAAGCTAGAAAAATATTAGGAATAAATTATTATCTAGAGCCTGCTGCAAA
AGAATATATTCAAAAATGCAAAAAAGCTAAAGGAAAGAAGACTTCAGAAATACCCATTAAGATGACTATAAAAGAAGAAG
GGTTTTTTAAAAAACCCACATACAAGGAATGCTTAACAAAAGGAGTGGATCCATTAGATGGGGAATATATTGATTGGAAG
ATAATAGAAAAATTTGAAGAAGCCTCCCCACAGTTAAAGAAGGAATTGAAGGAAGAAATACTTAAAGAATTAAAACAAGA
AATGGATCAGAAATTTGAGCAAATAAAAAAGGCAGTAGATGAGAAATTAGAAGTTTCTTTTTCTGATTTGGACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2741.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis