Browse Element(s) Details


Os.49255.1.S1_at

Description gb:AK070592.1
DB_XREF= gi:32980616
TID=Os.49255.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49255 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023055H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055H13, full insert sequence.
FL= gb:AK070592.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g273008/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27260Os.2741.4.S1_x_at11/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.47463.1.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260Os.14491.2.S1_x_at5/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27260OsAffx.8513.1.S1_s_at1/1110+14044620..14060603transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g27270NANA10+14063523..14063939hypothetical protein
LOC_Os10g27280Os.46809.1.S1_at11/1110+14067758..14069259Thaumatin family protein, expressed
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49255.1.S1_at--341--7151Chr10:14075079..14075103 (25 bp)
GTCTTCTCGAGCTTTCAGATTGTAA
LOC_Os10g27300
Os.49255.1.S1_at--98--7551Chr10:14075210..14075234 (25 bp)
GTGGCTGTGGACTCCAGGATTACAT
LOC_Os10g27300
Os.49255.1.S1_at--1156--7851Chr10:14075248..14075272 (25 bp)
GGTATGCACTATTCCAATTTCAGAT
LOC_Os10g27300
Os.49255.1.S1_at--1055--6291Chr10:14075270..14075294 (25 bp)
GATGATGCATTTCCCTGATTTGAGA
LOC_Os10g27300
Os.49255.1.S1_at--117--6031Chr10:14075291..14075315 (25 bp)
GAGATGTTTCCTTTTTTCCAATCTA
LOC_Os10g27300
Os.49255.1.S1_at--842--8771Chr10:14075377..14075401 (25 bp)
TGTTAGGTCATTTCGTGGCTGCCAC
LOC_Os10g27300
Os.49255.1.S1_at--1020--6811Chr10:14075424..14075448 (25 bp)
GTTTAGCAATATGACCTCTTTAGAT
LOC_Os10g27300
Os.49255.1.S1_at--817--8671Chr10:14075576..14075600 (25 bp)
TGTGATGACCATTTCCTGCAAGTGA
LOC_Os10g27300
Os.49255.1.S1_at--179--6811Chr10:14075618..14075642 (25 bp)
GTTTTGTAGACCACATGAACTTATG
NONE
Os.49255.1.S1_at--718--2191Chr10:14075646..14075670 (25 bp)
ACACACGGTAGGACCTGTAGGACCT
NONE
Os.49255.1.S1_at--372--6931Chr10:14075662..14075686 (25 bp)
GTAGGACCTATATACATCTCATTGG
NONE
Target Sequence 
GTCTTCTCGAGCTTTCAGATTGTAAGCTTCACAAGAAAAAGAGTGTGGCTGTGGACTCCAGGATTACATTGAATCTTGAA
AAGGTATGCACTATTCCAATTTCAGATGATGCATTTCCCTGATTTGAGATGTTTCCTTTTTTCCAATCTAACAAAGGAAA
CCTTTCCTTGAGGGAATTCCATGAAATATATTGGTTTCCAGATTTCAAGATTGTTAGGTCATTTCGTGGCTGCCACTTCA
ACTGTAGGTGTGTGCATAGTTTAGCAATATGACCTCTTTAGATTAATATTGTGGTGAAGGAAAATATATAGGCGTTTTGA
CAACTGTTAGTGTTTCTGAAATGTTCACACTTGCTATCTACTTTTTACTTCAATTAAGGCAACTATGAACAATATTTTTT
TTTGGAATTATGTGATGACCATTTCCTGCAAGTGAAATGGATGTAAATTTGTGTTTTGTAGACCACATGAACTTATGTGG
ACACACGGTAGGACCTGTAGGACCTATATACATCTCATTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49255.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis