Browse Element(s) Details


OsAffx.3584.1.S1_x_at

Description tigr:9631.m05143
TID=OsAffx.3584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5257011/11Acyltransferase family protein
LOC_Os10g273304/11Acyltransferase family protein, expressed
LOC_Os03g070101/11retrotransposon protein, putative, unclassified
LOC_Os02g023401/11Acyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52510OsAffx.31069.1.S1_x_at1/113+30081866..30085006hypothetical protein
LOC_Os03g52520NANA3+30085958..30086560retrotransposon protein, putative, unclassified
LOC_Os03g52530NANA3+30089494..30092048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52540NANA3+30092514..30095417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52550NANA3+30095943..30098868retrotransposon protein, putative, unclassified
LOC_Os03g52560OsAffx.13470.1.S1_at10/113+30099907..30101829Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os03g52570OsAffx.3584.1.S1_x_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.3584.1.S1_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.30560.1.S1_x_at3/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.27222.1.S1_x_at1/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3584.1.S1_x_at--54--7111Chr03:30102832..30103269 (25 bp)
GTCACCTACTCGGTGTCGCGGCTGT
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--315--9351Chr03:30102817..30102841 (25 bp)
TCGCGGCTGTCGGAGATATTGTCGC
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--179--232Chr10:14096017..14096037 (21 bp)
ATATTGTCGCCGATCAGGACGGTGC
LOC_Os10g27330
OsAffx.3584.1.S1_x_at--1112--6713Chr10:14096150..14096174 (25 bp)
GTTCTCGGCGCTGTTCGCGGAGCTC
LOC_Os10g27330
OsAffx.3584.1.S1_x_at--268--6312Chr03:30102605..30102629 (25 bp)
GATGAGCATGTTCCACGGCACGACG
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--358--10571Chr03:30102553..30102577 (25 bp)
TTCTACTTCTTCATGAACCCTAGCC
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--80--3711Chr03:30102534..30102558 (25 bp)
CTAGCCCCGGATACGTGGTCACCTT
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--621--6471Chr03:30102525..30102549 (25 bp)
GATACGTGGTCACCTTCCTCAGCAA
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--382--4072Chr10:14096360..14096384 (25 bp)
CGAGGTGGCCAACTACATCCAGAGG
LOC_Os10g27330
OsAffx.3584.1.S1_x_at--330--1131Chr03:30102390..30102414 (25 bp)
AGTGCACCAGCTTCACCAGGAAGGA
LOC_Os03g52570
OsAffx.3584.1.S1_x_at--141--2932Chr10:14096430..14096454 (25 bp)
AAGGACAAGTACAGGGCGCTCGCCG
LOC_Os10g27330
Target Sequence 
GTCACCTACTCGGTGTCGCGGCTGTCGGAGATATTGTCGCCGATCAGGACGGTGCGGCTGACGCGGGACAGGGCGGCGGA
CGCGGCGATGATCCGGCGGCTGCTGGCGGAGGGCGACCTGGTGATCTGCCCGGAGGGGACGACGTGCCGGGAGCCGTTCC
TCCTCCGGTTCTCGGCGCTGTTCGCGGAGCTCACCGACGAGATCGTGCCGGTGGCGATGGAGAACCAGATGAGCATGTTC
CACGGCACGACGGCGAGGGGGTGGAAGGCGCTGGACCCCTTCTACTTCTTCATGAACCCTAGCCCCGGATACGTGGTCAC
CTTCCTCAGCAAGCTCCCCGGCGAGCTCACCTGCAACGGCGGTGGCGGCGGCGGCGGCGGCCGGAGCAGCCACGAGGTGG
CCAACTACATCCAGAGGCTCATCGCCTCCACGCTCTCCTACGAGTGCACCAGCTTCACCAGGAAGGACAAGTACAGGGCG
CTCGCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3584.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis