Browse Element(s) Details


OsAffx.13470.1.S1_at

Description tigr:9631.m05142
TID=OsAffx.13470.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cell wall invertase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5256010/11Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52500NANA3+30075318..30076233hypothetical protein
LOC_Os03g52510OsAffx.31069.1.S1_x_at1/113+30081866..30085006hypothetical protein
LOC_Os03g52520NANA3+30085958..30086560retrotransposon protein, putative, unclassified
LOC_Os03g52530NANA3+30089494..30092048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52540NANA3+30092514..30095417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52550NANA3+30095943..30098868retrotransposon protein, putative, unclassified
LOC_Os03g52560OsAffx.13470.1.S1_at10/113+30099907..30101829Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os03g52570OsAffx.3584.1.S1_x_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.3584.1.S1_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.30560.1.S1_x_at3/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.27222.1.S1_x_at1/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13470.1.S1_at--1101--1991Chr03:30100751..30100775 (25 bp)
ACTACTTCGAGGTGTCCGGGCTCGC
LOC_Os03g52560
OsAffx.13470.1.S1_at--167--4031Chr03:30100805..30100829 (25 bp)
CGTTCCAGGTGATGGACCTCGACAA
LOC_Os03g52560
OsAffx.13470.1.S1_at--747--8791Chr03:30100970..30100994 (25 bp)
TGTTCTTCAGCGTGTTCAAGCGCGA
LOC_Os03g52560
OsAffx.13470.1.S1_at--551--8231Chr03:30101023..30101047 (25 bp)
GGCAAGAAGCACGTCGTCCTCACGT
LOC_Os03g52560
OsAffx.13470.1.S1_at--183--7171Chr03:30101067..30101091 (25 bp)
GTCGTACGCCGAGCAACTCTACAAG
LOC_Os03g52560
OsAffx.13470.1.S1_at--782--2531Chr03:30101081..30101105 (25 bp)
AACTCTACAAGCCAACGTACGCCGG
LOC_Os03g52560
OsAffx.13470.1.S1_at--560--5171NONE
GCAAGATTTCCCTACGAACTCTGAT
NONE
OsAffx.13470.1.S1_at--802--5471Chr03:30101150..30101626 (25 bp)
GAACTCTGATTGATCACTCGGTGGT
LOC_Os03g52560
OsAffx.13470.1.S1_at--365--9351Chr03:30101662..30101686 (25 bp)
TCGCAAGGGTGTACCCGACCAAGGC
LOC_Os03g52560
OsAffx.13470.1.S1_at--464--2231Chr03:30101695..30101719 (25 bp)
ACAAGGCGCGCCTCTTCGTGTTCAA
LOC_Os03g52560
OsAffx.13470.1.S1_at--449--1011Chr03:30101740..30101764 (25 bp)
AGGTCACCAACCTGAACGCGTACGA
LOC_Os03g52560
Target Sequence 
ACTACTTCGAGGTGTCCGGGCTCGCCACGCCGGCGCAGGCGGACGTGGAGGCGACGTTCCAGGTGATGGACCTCGACAAG
GCCGAGCCGTTCGACCCGGCGTGGCGCGGCGCCGACGCGCAGGCGGTGTGCGCGGCGCGCGGCGCGGACGCCAGGGGCGG
CGTCGGCCCGTTCGGCCTGTGGGTGCTCGCCTCCGACGAGCTCAAGGAGAGGACGGCCGTGTTCTTCAGCGTGTTCAAGC
GCGACGACGCCGACGTCGCCCGCGTCGACGGCGGCAAGAAGCACGTCGTCCTCACGTGCAACGACCCGTCCAGGTCGTCG
TACGCCGAGCAACTCTACAAGCCAACGTACGCCGGCTTCGTCGACGTCGACATCGCCCCCACCGGCAAGATTTCCCTACG
AACTCTGATTGATCACTCGGTGGTGGAGAGCTTCGGAGGGCACGGGAAGACGGCGATCCTCGCAAGGGTGTACCCGACCA
AGGCCGTCGGCGACAAGGCGCGCCTCTTCGTGTTCAACAACGGCGAGTCGGACGTCAAGGTCACCAACCTGAACGCGTAC
GA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13470.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis