Browse Element(s) Details


OsAffx.30560.1.S1_x_at

Description tigr:9638.m02344
TID=OsAffx.30560.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Acyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2733011/11Acyltransferase family protein, expressed
LOC_Os03g525703/11Acyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27280Os.46809.1.S1_at11/1110+14067758..14069259Thaumatin family protein, expressed
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008152biological_processmetabolism
GO:0003841molecular_function1-acylglycerol-3-phosphate O-acyltransferase activity
GO:0008415molecular_functionacyltransferase activity
GO:0008514molecular_functionorganic anion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30560.1.S1_x_at--55--7111Chr10:14095983..14096007 (25 bp)
GTCACCTACTCGCTGTCGCGGCTGT
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--391--3871Chr10:14095995..14096019 (25 bp)
CTGTCGCGGCTGTCGGAGTTCCTGT
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--659--3791Chr10:14096085..14096109 (25 bp)
CTCGACGAGGGCGACCTGGCGATCT
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--992--1671Chr10:14096205..14096229 (25 bp)
AGCCGGATGGGCATGTTCCACGGCA
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--49--6251Chr10:14096252..14096276 (25 bp)
GATGGACCCCTTCTACTTCTTCATG
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--433--6991Chr10:14096291..14096315 (25 bp)
GTACGTCGTCACGTTCCTCGGCAAG
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--708--8351Chr10:14096343..14096367 (25 bp)
GGCGGCAGGTCCAGCCACGAGGTGG
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--383--4072Chr10:14096360..14096384 (25 bp)
CGAGGTGGCCAACTACATCCAGAGG
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--950--2532Chr10:14096370..14096394 (25 bp)
AACTACATCCAGAGGCTCATCGCCG
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--327--1131Chr10:14096410..14096434 (25 bp)
AGTGCACCAGCCTCACCAGGAAGGA
LOC_Os10g27330
OsAffx.30560.1.S1_x_at--276--1172Chr10:14096437..14096461 (25 bp)
AGTACAGGGCGCTCGCCGGCAACGA
LOC_Os10g27330
Target Sequence 
GTCACCTACTCGCTGTCGCGGCTGTCGGAGTTCCTGTCGCCGATCAGGACGGTGCGGCTGACGCGGGACCGCGCCGCCGA
CGCCGCCATGATCGGCGAGCTCCTCGACGAGGGCGACCTGGCGATCTGCCCCGAGGGGACGACGTGCCGGGAGCCGTTCC
TGCTGCGGTTCTCGGCGCTGTTCGCGGAGCTCACCGACGAGGTGGTGCCGGTGGCGATGGAGAGCCGGATGGGCATGTTC
CACGGCACGACGGCGAGGGGGTGGAAGGGGATGGACCCCTTCTACTTCTTCATGAACCCCAGCCCGGCGTACGTCGTCAC
GTTCCTCGGCAAGCTGCCGCCGGAGCACACCTGCGGCGCCGGCGGCAGGTCCAGCCACGAGGTGGCCAACTACATCCAGA
GGCTCATCGCCGCCACGCTCTCCTACGAGTGCACCAGCCTCACCAGGAAGGACAAGTACAGGGCGCTCGCCGGCAACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30560.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis