Browse Element(s) Details


Os.18412.2.S1_x_at

Description gb:NM_196478.1
DB_XREF= gi:37534315
TID=Os.18412.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.18412 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBa0045B21.11), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2734010/11prolyl 4-hydroxylase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein
LOC_Os10g27400OsAffx.20350.1.S1_x_at11/1110+14118285..14118815hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0018401biological_processpeptidyl-proline hydroxylation to 4-hydroxy-L-proline
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004656molecular_functionprocollagen-proline 4-dioxygenase activity
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18412.2.S1_x_at--975--5851Chr10:14098100..14098124 (25 bp)
GAGCCACACTATGATTACTTCCATG
LOC_Os10g27340
Os.18412.2.S1_x_at--726--2691Chr10:14098063..14098087 (25 bp)
AAGCTCTTGGAGGACATCGGATCGC
LOC_Os10g27340
Os.18412.2.S1_x_at--655--8691Chr10:14098035..14098059 (25 bp)
TGTGCTCATGTACCTTTCAGACGTT
LOC_Os10g27340
Os.18412.2.S1_x_at--442--6011Chr10:14098000..14098024 (25 bp)
GAGAGACCATCTTTCCAGAAGCAGA
LOC_Os10g27340
Os.18412.2.S1_x_at--1101--8071Chr10:14097546..14097570 (25 bp)
GGAGCTGCCCGGTCATTGAAGGTCA
LOC_Os10g27340
Os.18412.2.S1_x_at--663--5311Chr10:14097529..14097553 (25 bp)
GAAGGTCAGAAGTGGTCCGCAACTA
LOC_Os10g27340
Os.18412.2.S1_x_at--255--8571Chr10:14097502..14097526 (25 bp)
TGGATCCATGTGAGGTCCTTCGACA
LOC_Os10g27340
Os.18412.2.S1_x_at--1--2731Chr10:14097469..14097493 (25 bp)
AAGCAGGGAGCTTCCACTGACGGGT
LOC_Os10g27340
Os.18412.2.S1_x_at--780--2751Chr10:14097388..14097412 (25 bp)
AATCCGAACTACATGGTGGGTACCA
LOC_Os10g27340
Os.18412.2.S1_x_at--650--8631Chr10:14097372..14097396 (25 bp)
TGGGTACCAATGAAGCACCTGGCTT
LOC_Os10g27340
Os.18412.2.S1_x_at--634--791NONE
ATGTGTGTGCACATTGCCGAATCGA
NONE
Target Sequence 
GAGCCACACTATGATTACTTCCATGACAAAAATAATCAAGCTCTTGGAGGACATCGGATCGCCACTGTGCTCATGTACCT
TTCAGACGTTGGGAAGGGGGGAGAGACCATCTTTCCAGAAGCAGAGGGGAAGTTATTACAACCCAAGGATGATACATGGT
CTGACTGTGCTAAAAATGGATATGCAGTAAAACCGGTAAAGGGTGATGCCCTTCTGTTCTTCAGTCTCCACCCCGATGCA
ACAACAGACTCTGACAGCCTGCACGGGAGCTGCCCGGTCATTGAAGGTCAGAAGTGGTCCGCAACTAAATGGATCCATGT
GAGGTCCTTCGACATCTCTGTCAAGCAGGGAGCTTCCACTGACGGGTGCGAGGATGAGAACGTCCTCTGCCCCCAGTGGG
CTGCAGTAGGGGAGTGTGCCAAGAATCCGAACTACATGGTGGGTACCAATGAAGCACCTGGCTTCTGCCGGAAGAGCTGC
AATGTGTGTGCACATTGCCGAATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18412.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis