Browse Element(s) Details


OsAffx.8130.1.S1_at

Description tigr:9638.m02343
TID=OsAffx.8130.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2732011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g27280Os.46809.1.S1_at11/1110+14067758..14069259Thaumatin family protein, expressed
LOC_Os10g27290OsAffx.31998.1.S1_at1/1110+14071807..14072277hypothetical protein
LOC_Os10g27300Os.49255.1.S1_at8/1110+14072931..14075635expressed protein
LOC_Os10g27310NANA10+14077902..14078132hypothetical protein
LOC_Os10g27320OsAffx.8130.1.S1_at11/1110+14089882..14090787hypothetical protein
LOC_Os10g27330OsAffx.30560.1.S1_x_at11/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.3584.1.S1_x_at4/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27330OsAffx.30743.1.S1_x_at1/1110+14092789..14096759Acyltransferase family protein, expressed
LOC_Os10g27340Os.18412.1.S1_a_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.1.S1_at11/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27340Os.18412.2.S1_x_at10/1110+14096801..14100948prolyl 4-hydroxylase, putative, expressed
LOC_Os10g27350OsAffx.20351.1.S1_x_at11/1110+14103018..14103776hypothetical protein
LOC_Os10g27360Os.46817.1.S1_at10/1110+14105439..14107400No apical meristem protein, expressed
LOC_Os10g27370Os.25070.1.A1_at11/1110+14109835..14111457transposon protein, putative, Pong sub-class, expressed
LOC_Os10g27380Os.46798.2.S1_x_at11/1110+14112352..14114069expressed protein
LOC_Os10g27380Os.46798.1.S1_at11/1110+14112352..14114069expressed protein
LOC_Os10g27390OsAffx.18422.1.S1_at11/1110+14115274..14117178No apical meristem protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8130.1.S1_at--540--9511Chr10:14089932..14089956 (25 bp)
TCTCAGGCGTGCGTGGACTAGCAGT
LOC_Os10g27320
OsAffx.8130.1.S1_at--879--2571Chr10:14089981..14090005 (25 bp)
AACGGACGTGCGGTCAGCGGCGGAA
LOC_Os10g27320
OsAffx.8130.1.S1_at--814--1591Chr10:14090081..14090105 (25 bp)
AGCTCCGCGTCAACGGCGATGAGGC
LOC_Os10g27320
OsAffx.8130.1.S1_at--252--5791Chr10:14090106..14090130 (25 bp)
GACGAAAGCGGTGGCACTGCTGCTG
LOC_Os10g27320
OsAffx.8130.1.S1_at--365--711Chr10:14090146..14090533 (25 bp)
ATGATGGTGAGACTCTGCTTCTGCC
LOC_Os10g27320
OsAffx.8130.1.S1_at--149--3931Chr10:14090535..14090559 (25 bp)
CTGGCCACCGTCTATTTTCTGTTGT
LOC_Os10g27320
OsAffx.8130.1.S1_at--621--7151Chr10:14090544..14090568 (25 bp)
GTCTATTTTCTGTTGTGCTCTCTAT
LOC_Os10g27320
OsAffx.8130.1.S1_at--282--10611Chr10:14090551..14090575 (25 bp)
TTCTGTTGTGCTCTCTATTTTCTGA
LOC_Os10g27320
OsAffx.8130.1.S1_at--500--7311Chr10:14090558..14090582 (25 bp)
GTGCTCTCTATTTTCTGAGCCGCTC
LOC_Os10g27320
OsAffx.8130.1.S1_at--823--8911Chr10:14090573..14090597 (25 bp)
TGAGCCGCTCCCACGATACTGGAGG
LOC_Os10g27320
OsAffx.8130.1.S1_at--366--9252Chr10:14090676..14090700 (25 bp)
TCCTTCTCTAGCCATAGACGCAAAG
LOC_Os10g27320
Target Sequence 
TCTCAGGCGTGCGTGGACTAGCAGTGGGCGGTGGCGGCGGCGCGTGGGGAACGGACGTGCGGTCAGCGGCGGAAGAGCGT
GTGGATGGCGCGATGGGCGGCGGGCAGCGCCGAGGAGGGTGTTGGAGGAGGCAGGCAGGGCCGAGGATGAGCTCCGCGTC
AACGGCGATGAGGCGACGAAAGCGGTGGCACTGCTGCTGCTCCCTTCCCTGGAGATGATGGTGAGACTCTGCTTCTGCCG
CTGGCCACCGTCTATTTTCTGTTGTGCTCTCTATTTTCTGAGCCGCTCCCACGATACTGGAGGGGATGCCGACGAGGCTG
AGGAGGACTATGAGGAGGAGCTCCGTGCGTCGATCCGCCTCTACCGCCGGCCACCATCTCCTCCTTCTCTAGCCATAGAC
GCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8130.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis