Browse Element(s) Details


Os.11862.2.S1_at

Description gb:AK107394.1
DB_XREF= gi:32992603
TID=Os.11862.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11862 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-127-D03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-127-D03, full insert sequence.
FL= gb:AK107394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5259411/11NOT2/NOT3/NOT5 family protein, expressed
LOC_Os02g541201/11NOT2/NOT3/NOT5 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52510OsAffx.31069.1.S1_x_at1/113+30081866..30085006hypothetical protein
LOC_Os03g52520NANA3+30085958..30086560retrotransposon protein, putative, unclassified
LOC_Os03g52530NANA3+30089494..30092048retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52540NANA3+30092514..30095417retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g52550NANA3+30095943..30098868retrotransposon protein, putative, unclassified
LOC_Os03g52560OsAffx.13470.1.S1_at10/113+30099907..30101829Beta-fructofuranosidase, insoluble isoenzyme 3 precursor, putative, expressed
LOC_Os03g52570OsAffx.3584.1.S1_x_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.3584.1.S1_at11/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.30560.1.S1_x_at3/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52570OsAffx.27222.1.S1_x_at1/113+30102308..30104124Acyltransferase family protein
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016481biological_processnegative regulation of transcription
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11862.2.S1_at--1059--7932Chr03:30120487..30120511 (25 bp)
GGATACAAAGGTGGTTACAGCTATA
LOC_Os03g52594
Os.11862.2.S1_at--1054--4851Chr03:30120468..30120492 (25 bp)
GCTATATTATTGTAGAACGTTCGTT
LOC_Os03g52594
Os.11862.2.S1_at--867--5451Chr03:30120454..30120478 (25 bp)
GAACGTTCGTTGACATTCAGTGAGG
LOC_Os03g52594
Os.11862.2.S1_at--726--3591Chr03:30120441..30120465 (25 bp)
CATTCAGTGAGGGTGTTTTGATTAA
LOC_Os03g52594
Os.11862.2.S1_at--287--1611Chr03:30120390..30120414 (25 bp)
AGCTGCATGACTGTTACAATTTGTT
LOC_Os03g52594
Os.11862.2.S1_at--509--8711Chr03:30120366..30120390 (25 bp)
TGTCTCAACTTTCAACTGGCCCTCG
LOC_Os03g52594
Os.11862.2.S1_at--322--8471Chr03:30120350..30120374 (25 bp)
TGGCCCTCGCTAGCATGTCATAGAA
LOC_Os03g52594
Os.11862.2.S1_at--607--1531Chr03:30120339..30120363 (25 bp)
AGCATGTCATAGAACTACGTGTTAC
LOC_Os03g52594
Os.11862.2.S1_at--814--5471Chr03:30120328..30120352 (25 bp)
GAACTACGTGTTACAAAATCCATTT
LOC_Os03g52594
Os.11862.2.S1_at--880--3031Chr03:30120312..30120336 (25 bp)
AATCCATTTTGCTTTGACATTTTAT
LOC_Os03g52594
Os.11862.2.S1_at--62--171Chr03:30120294..30120318 (25 bp)
ATTTTATCTTTTATGGAAGGCTGCC
LOC_Os03g52594
Target Sequence 
GGATACAAAGGTGGTTACAGCTATATTATTGTAGAACGTTCGTTGACATTCAGTGAGGGTGTTTTGATTAATTATACTTG
GTGTATCATGCAATATCAGCTGCATGACTGTTACAATTTGTTGTCTCAACTTTCAACTGGCCCTCGCTAGCATGTCATAG
AACTACGTGTTACAAAATCCATTTTGCTTTGACATTTTATCTTTTATGGAAGGCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11862.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis