Browse Element(s) Details


Os.10701.1.S1_at

Description gb:AK070408.1
DB_XREF= gi:32980432
TID=Os.10701.1
CNT=53
FEA=FLmRNA
TIER=FL+Stack
STK=15
UG=Os.10701 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-044-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054M04, full insert sequence.
FL= gb:AK104929.1 gb:AK070408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5263011/11endo-1,4-beta-glucanase Cel1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0030244biological_processcellulose biosynthesis
GO:0009504cellular_componentcell plate
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
GO:0008810molecular_functioncellulase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10701.1.S1_at--420--8071Chr03:30132790..30132814 (25 bp)
GGAGCACTGGTTGCTGGCCCTGATA
LOC_Os03g52630
Os.10701.1.S1_at--1057--8391Chr03:30132775..30132799 (25 bp)
GGCCCTGATAGGCATGATGGCTTCA
LOC_Os03g52630
Os.10701.1.S1_at--657--2531Chr03:30132736..30132760 (25 bp)
AACTACAATTACACGGAGCCTACTC
LOC_Os03g52630
Os.10701.1.S1_at--367--1931Chr03:30132724..30132748 (25 bp)
ACGGAGCCTACTCTTGCAGCAAATG
LOC_Os03g52630
Os.10701.1.S1_at--813--8451Chr03:30132698..30132722 (25 bp)
TGGCCTGGTGGCAGCCTTGATTTCC
LOC_Os03g52630
Os.10701.1.S1_at--1068--10271Chr03:30132678..30132702 (25 bp)
TTTCCCTAACTAACATTCACGTCAA
LOC_Os03g52630
Os.10701.1.S1_at--627--7111Chr03:30132562..30132586 (25 bp)
GTCAGATCGCTGAATATTTCTTGAG
LOC_Os03g52630
Os.10701.1.S1_at--597--1371Chr03:30132460..30132484 (25 bp)
AGAGCCTCTATTTTCTGTATCAGTA
LOC_Os03g52630
Os.10701.1.S1_at--747--7331Chr03:30132387..30132411 (25 bp)
GTGCACCTTGTGAAACTAATTTTTG
LOC_Os03g52630
Os.10701.1.S1_at--481--7691Chr03:30132362..30132386 (25 bp)
GGGTCCTTGTTGTTATTCGTTCAGA
LOC_Os03g52630
Os.10701.1.S1_at--1149--6791Chr03:30132351..30132375 (25 bp)
GTTATTCGTTCAGAGCTCATGTGTG
LOC_Os03g52630
Target Sequence 
GGAGCACTGGTTGCTGGCCCTGATAGGCATGATGGCTTCAAAGATGTCCGTACAAACTACAATTACACGGAGCCTACTCT
TGCAGCAAATGCTGGCCTGGTGGCAGCCTTGATTTCCCTAACTAACATTCACGTCAAAAGTGGAATCGATAAGAACACCA
TCTTCTCTGCAGTTCCTCCGATGTTTCCAACTCCCCCACCTCCACCGTCAGCTTGGAAACCATGAAGAGTCAGATCGCTG
AATATTTCTTGAGCATCAAACGGAGGGAACGACAGATGTTTGTTTGGTACAGCAAAGGACACATACAGAAAGCAGACAAC
ATAAGCTTACAGAGCCTCTATTTTCTGTATCAGTATGACAGATCGGTATAAATTCATCTGTCGANCAATAGACCGGGATG
TTGTGTGCACCTTGTGAAACTAATTTTTGGGGTCCTTGTTGTTATTCGTTCAGAGCTCATGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis