Browse Element(s) Details


Os.12286.1.S1_at

Description gb:AK100865.1
DB_XREF= gi:32986074
TID=Os.12286.1
CNT=72
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.12286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) mRNA for hypothetical protein, complete cds, clone: 14FPB077
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023124A15, full insert sequence.
FL= gb:AK068510.1 gb:AK100865.1 gb:AB110184.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5269011/11CBS domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12286.1.S1_at--242--10311Chr03:30159867..30159891 (25 bp)
TTTCGCCTTGCACTTTCATGAACTA
LOC_Os03g52690
Os.12286.1.S1_at--942--8131Chr03:30159812..30159836 (25 bp)
GGACAGACTCTTGGATTCTACTCTA
LOC_Os03g52690
Os.12286.1.S1_at--37--211Chr03:30159693..30159717 (25 bp)
ATTTCGCTGGTCATTCAACACATTT
LOC_Os03g52690
Os.12286.1.S1_at--265--9251Chr03:30159587..30159611 (25 bp)
TCCTTTTCATTGCATCAGCGCAGTG
LOC_Os03g52690
Os.12286.1.S1_at--230--10691Chr03:30159553..30159577 (25 bp)
TTCCACTTGACATAATGCTCCCAGG
LOC_Os03g52690
Os.12286.1.S1_at--1072--3151Chr03:30159459..30159483 (25 bp)
AATTCCACTTGTACAGACTTTCTTG
LOC_Os03g52690
Os.12286.1.S1_at--971--1371Chr03:30159445..30159469 (25 bp)
AGACTTTCTTGTTGCTTTCTTACCA
LOC_Os03g52690
Os.12286.1.S1_at--527--10711Chr03:30159434..30159458 (25 bp)
TTGCTTTCTTACCAGTCCTTTATAC
LOC_Os03g52690
Os.12286.1.S1_at--684--6591Chr03:30159402..30159426 (25 bp)
GATTGTCCGGTCATTCTAGCAGTCA
LOC_Os03g52690
Os.12286.1.S1_at--726--5011Chr03:30159384..30159408 (25 bp)
GCAGTCACCTGCATTACAACGGAAA
LOC_Os03g52690
Os.12286.1.S1_at--14--6531Chr03:30159357..30159381 (25 bp)
GATTTGCAACAACTCTGTTTCGGAC
LOC_Os03g52690
Target Sequence 
TTTCGCCTTGCACTTTCATGAACTAAATGATTCTTGGAATCTAGGAGTATTAATTGGACAGACTCTTGGATTCTACTCTA
GATCAATAAGGTTGACTACATTGATAGGGGATTCCCTGTAGAATACTGTGCATCAAAATGAATACCGATTAATAGTCAAT
ATGTAGACATGACCATTTCGCTGGTCATTCAACACATTTTGGTGCGTACATTGCTTTGTTCTAGCAGTATTTTTGCTGAC
CAGTGTACAAAATGGTAGGCTAGAGCTATAATGCTTTACATCCTTTTCATTGCATCAGCGCAGTGGAAATTAACTTCCAC
TTGACATAATGCTCCCAGGCCCCATCAGGATTGGTGTGGGGTTGTTTATTTATGTGGAATAGTTTGAGAACTATATTGTT
TTTTAAGTAATTCCACTTGTACAGACTTTCTTGTTGCTTTCTTACCAGTCCTTTATACTGAAACTGATTGTCCGGTCATT
CTAGCAGTCACCTGCATTACAACGGAAATTGATTTGCAACAACTCTGTTTCGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis