Browse Element(s) Details


Os.53148.1.S1_at

Description gb:AK071016.1
DB_XREF= gi:32981039
TID=Os.53148.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081E04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081E04, full insert sequence.
FL= gb:AK071016.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5272011/11magnesium-dependent phosphatase-1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed
LOC_Os03g52770Os.18558.1.S1_at10/113+30199506..30209087expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53148.1.S1_at--805--471Chr03:30176570..30176714 (25 bp)
ATCTGGCCCTTATACTGCGACTGCT
LOC_Os03g52720
Os.53148.1.S1_at--162--1671Chr03:30176400..30176425 (25 bp)
AGCCCATGTTCGTCACCAAGGAAAT
LOC_Os03g52720
Os.53148.1.S1_at--938--3111Chr03:30175812..30175836 (25 bp)
AATATTCGATAGCTGGACTCACAAG
LOC_Os03g52720
Os.53148.1.S1_at--204--2771Chr03:30175790..30175814 (25 bp)
AAGACCGAGCATTTCCAAAGGATCC
LOC_Os03g52720
Os.53148.1.S1_at--388--6171Chr03:30175764..30175788 (25 bp)
GAGGACGACTGGGATTCCATACGAG
LOC_Os03g52720
Os.53148.1.S1_at--563--9231Chr03:30175749..30175773 (25 bp)
TCCATACGAGTCCATGCTTTTCTTT
LOC_Os03g52720
Os.53148.1.S1_at--312--8031Chr03:30174965..30174989 (25 bp)
GGAGTGACGAGCATACTGGTTGATT
LOC_Os03g52720
Os.53148.1.S1_at--458--10831Chr03:30174908..30174932 (25 bp)
TTGGGTCTAAATAACTTTGCTGCTA
LOC_Os03g52720
Os.53148.1.S1_at--1144--5111Chr03:30174852..30174876 (25 bp)
GCAAACCTCATTTAACGGCTAGAAC
LOC_Os03g52720
Os.53148.1.S1_at--1011--7051Chr03:30174780..30174804 (25 bp)
GTAATGTAATTTATTCCCCTTGCTA
LOC_Os03g52720
Os.53148.1.S1_at--832--10651Chr03:30174767..30174791 (25 bp)
TTCCCCTTGCTATATATTGGACAAC
LOC_Os03g52720
Target Sequence 
ATCTGGCCCTTATACTGCGACTGCTGCTCCATCGGCGACTCGCCGAGGCTCTTCCGCCACGCCAAGGGCATCATGTGCGC
CCTCAAGGAGAAGGGGATCGCCATGGCGGTCGCGTCCCGCTCCTCCACACCGGACATCGCCAACGACTTCCTTGACAAGC
TCGAGCTCCAGCCCATGTTCGTCACCAAGGAAATATTCGATAGCTGGACTCACAAGACCGAGCATTTCCAAAGGATCCAG
AGGACGACTGGGATTCCATACGAGTCCATGCTTTTCTTTGACGACGAGCACAGAAATTTTGCAACGGTATCAAAAATGGG
AGTGACGAGCATACTGGTTGATTGGGATGGAGGTGTTAATCTTGAAATGTTTAAGTTGGGTCTAAATAACTTTGCTGCTA
AGTTTGCTGCCTCGAGCACAGATAAAGATGAGCAAACCTCATTTAACGGCTAGAACTGATCGACAAACAAGGAAAATAAA
TCATTTGTGTACTCATTAAACTTGTAATGTAATTTATTCCCCTTGCTATATATTGGACAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis