Browse Element(s) Details


OsAffx.13471.1.S1_at

Description tigr:9631.m05160
TID=OsAffx.13471.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5271011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein
LOC_Os03g52690Os.12286.1.S1_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.12286.1.S2_a_at11/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52690Os.39828.1.A1_s_at9/113+30156918..30160996CBS domain containing protein, expressed
LOC_Os03g52700Os.15893.1.A1_at9/113+30165974..30170841expressed protein
LOC_Os03g52710OsAffx.13471.1.S1_at11/113+30172325..30174164expressed protein
LOC_Os03g52720Os.53148.1.S1_at11/113+30174754..30176904magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730Os.21398.1.S1_at11/113+30178817..30180732magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740Os.35344.3.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740Os.35344.18.S1_x_at5/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52740OsAffx.22940.5.S1_x_at1/113+30182052..30185223SWIM zinc finger family protein
LOC_Os03g52750Os.3905.1.S1_at11/113+30186454..30191750Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g52760Os.18432.1.A1_s_at11/113+30194828..30197720kinase, pfkB family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13471.1.S1_at--816--3591Chr03:30172900..30172924 (25 bp)
CATTGCCGTGCAACTAGGGACTTGA
LOC_Os03g52710
OsAffx.13471.1.S1_at--1--4531Chr03:30172866..30172890 (25 bp)
GCCGCTATGTGCAGCATGTGCTTAA
LOC_Os03g52710
OsAffx.13471.1.S1_at--723--771Chr03:30172851..30172875 (25 bp)
ATGTGCTTAACTCATGCGGGCATGC
LOC_Os03g52710
OsAffx.13471.1.S1_at--642--7591Chr03:30172834..30172858 (25 bp)
GGGCATGCATCCTTATGTGCTGAGT
LOC_Os03g52710
OsAffx.13471.1.S1_at--82--10631Chr03:30172746..30172770 (25 bp)
TTCGACTACGCCTTTACTACAAGTG
LOC_Os03g52710
OsAffx.13471.1.S1_at--542--8511Chr03:30172719..30172743 (25 bp)
TGGAAGCTGGCCTTATCTCTAAGCA
LOC_Os03g52710
OsAffx.13471.1.S1_at--474--6311Chr03:30172657..30172681 (25 bp)
GATCCTGTTAACTTGGACGTCCAAC
LOC_Os03g52710
OsAffx.13471.1.S1_at--402--3251Chr03:30172636..30172660 (25 bp)
CAACGGCTACATTCCTTGTTTGATG
LOC_Os03g52710
OsAffx.13471.1.S1_at--609--2411Chr03:30172601..30172625 (25 bp)
AAACAATTTGGCCTCCTTGATCTGC
LOC_Os03g52710
OsAffx.13471.1.S1_at--516--211Chr03:30172501..30172525 (25 bp)
ATTTGTTCCCATGGTTTCACCTTGA
LOC_Os03g52710
OsAffx.13471.1.S1_at--12--3331Chr03:30172419..30172443 (25 bp)
CACTTCTGGCTTTTCTTTTGGATGA
LOC_Os03g52710
Target Sequence 
CATTGCCGTGCAACTAGGGACTTGAGTAGCTGTGGCCGCTATGTGCAGCATGTGCTTAACTCATGCGGGCATGCATCCTT
ATGTGCTGAGTGCAGCCAAAGATGTGATGTCTGCCCAATTTGCAGGAGCCCAATACCAGACACTGGGAATAGGGTTCGAC
TACGCCTTTACTACAAGTGCCTGGAAGCTGGCCTTATCTCTAAGCAGCATGATGAAAGGTTTCAGGAAAAGGAAGACCAT
AGTGATCCTGTTAACTTGGACGTCCAACGGCTACATTCCTTGTTTGATGTTGCCCTTCAAAACAATTTGGCCTCCTTGAT
CTGCCACTGTATCCTCTTCAGAAGTTTATTCTGCTTTAGGCTGATAATATGGCTCATGTTCATTATATATATATGCTACA
TTTGTTCCCATGGTTTCACCTTGACATTTATACCAGATACCACAGATGTTTGTTTGGATGAGAATGCTGTGTCAAGTGAT
CCACTTCTGGCTTTTCTTTTGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13471.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis