Browse Element(s) Details


OsAffx.22940.5.S1_x_at

Description tigr:9629.m01406
TID=OsAffx.22940.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1204011/11Transposable element protein, putative, MuDR
LOC_Os12g0467011/11transposon protein, putative, Mutator sub-class
LOC_Os01g5422011/11transposon protein, putative, Mutator sub-class
LOC_Os03g1371010/11transposon protein, putative, Mutator sub-class
LOC_Os01g6109010/11transposon protein, putative, Mutator sub-class
LOC_Os01g2725010/11transposon protein, putative, Mutator sub-class
LOC_Os07g3431010/11Transposable element protein, putative, MuDR
LOC_Os06g4448010/11transposon protein, putative, Mutator sub-class
LOC_Os07g1339010/11Transposable element protein, putative, MuDR
LOC_Os07g3258010/11Transposable element protein, putative, MuDR
LOC_Os05g4076010/11Transposable element protein, putative, MuDR
LOC_Os05g5074010/11Transposable element protein, putative, MuDR
LOC_Os02g2933010/11transposon protein, putative, Mutator sub-class
LOC_Os06g4190010/11transposon protein, putative, Mutator sub-class
LOC_Os08g4114010/11hypothetical protein
LOC_Os11g3588010/11transposon protein, putative, Mutator sub-class
LOC_Os10g3322010/11Transposable element protein, putative, MuDR
LOC_Os11g3308010/11transposon protein, putative, Mutator sub-class
LOC_Os01g1429010/11hypothetical protein
LOC_Os07g057709/11transposon protein, putative, Mutator sub-class
LOC_Os03g282049/11transposon protein, putative, Mutator sub-class
LOC_Os06g202109/11transposon protein, putative, Mutator sub-class
LOC_Os08g054509/11transposon protein, putative, Mutator sub-class
LOC_Os07g302309/11transposon protein, putative, Mutator sub-class
LOC_Os02g520509/11transposon protein, putative, Mutator sub-class
LOC_Os06g061108/11transposon protein, putative, Mutator sub-class
LOC_Os12g395708/11Transposable element protein, putative, MuDR
LOC_Os08g068208/11transposon protein, putative, Mutator sub-class
LOC_Os05g068508/11calcineurin-like phosphoesterase family protein, putative
LOC_Os08g036608/11transposon protein, putative, Mutator sub-class
LOC_Os02g462308/11transposon protein, putative, Mutator sub-class
LOC_Os02g275107/11transposon protein, putative, Mutator sub-class
LOC_Os02g466307/11SWIM zinc finger family protein
LOC_Os08g366707/11hypothetical protein
LOC_Os03g556907/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g062806/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g184406/11SWIM zinc finger family protein
LOC_Os01g352206/11transposon protein, putative, Mutator sub-class
LOC_Os12g262046/11transposon protein, putative, Mutator sub-class
LOC_Os08g255806/11Transposable element protein, putative, MuDR
LOC_Os05g357505/11hypothetical protein
LOC_Os01g402305/11transposon protein, putative, Mutator sub-class
LOC_Os01g477905/11transposon protein, putative, Mutator sub-class
LOC_Os01g571805/11hypothetical protein
LOC_Os07g422105/11transposon protein, putative, Mutator sub-class
LOC_Os09g283305/11transposon protein, putative, Mutator sub-class
LOC_Os05g459705/11transposon protein, putative, Mutator sub-class
LOC_Os04g538205/11transposon protein, putative, Mutator sub-class
LOC_Os09g376305/11Transposable element protein, putative, MuDR
LOC_Os06g095805/11Transposable element protein, putative, MuDR
LOC_Os03g190504/11SWIM zinc finger family protein
LOC_Os01g608804/11transposon protein, putative, Mutator sub-class
LOC_Os02g183604/11transposon protein, putative, Mutator sub-class
LOC_Os11g332904/11Transposable element protein, putative, MuDR
LOC_Os11g430604/11transposon protein, putative, Mutator sub-class
LOC_Os12g317294/11Transposable element protein, putative, MuDR
LOC_Os01g499504/11transposon protein, putative, Mutator sub-class
LOC_Os02g418704/11Transposable element protein, putative, MuDR
LOC_Os10g221644/11transposon protein, putative, Mutator sub-class
LOC_Os02g459604/11transposon protein, putative, Mutator sub-class
LOC_Os05g477204/11hypothetical protein
LOC_Os10g426004/11transposon protein, putative, Mutator sub-class
LOC_Os07g172404/11transposon protein, putative, Mutator sub-class
LOC_Os01g718904/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g511804/11transposon protein, putative, Mutator sub-class
LOC_Os03g053604/11retrotransposon protein, putative, unclassified
LOC_Os01g207604/11SWIM zinc finger family protein
LOC_Os08g396204/11transposon protein, putative, Mutator sub-class
LOC_Os06g192304/11hypothetical protein
LOC_Os01g439704/11transposon protein, putative, Mutator sub-class
LOC_Os02g099504/11transposon protein, putative, Mutator sub-class
LOC_Os04g563804/11transposon protein, putative, Mutator sub-class
LOC_Os01g644204/11hypothetical protein
LOC_Os01g184804/11transposon protein, putative, Mutator sub-class
LOC_Os02g091103/11SWIM zinc finger family protein
LOC_Os03g531303/11transposon protein, putative, Mutator sub-class
LOC_Os09g389003/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g253303/11transposon protein, putative, Mutator sub-class
LOC_Os06g370303/11transposon protein, putative, Mutator sub-class
LOC_Os06g142503/11transposon protein, putative, Mutator sub-class
LOC_Os03g468303/11transposon protein, putative, Mutator sub-class
LOC_Os06g479903/11Transposable element protein, putative, MuDR
LOC_Os07g375903/11hypothetical protein
LOC_Os11g436603/11transposon protein, putative, Mutator sub-class
LOC_Os07g180603/11transposon protein, putative, Mutator sub-class
LOC_Os01g743803/11hypothetical protein
LOC_Os04g581503/11Transposable element protein, putative, MuDR
LOC_Os06g348203/11Transposable element protein, putative, MuDR
LOC_Os02g042003/11transposon protein, putative, Mutator sub-class
LOC_Os09g303703/11transposon protein, putative, Mutator sub-class
LOC_Os10g026603/11transposon protein, putative, Mutator sub-class
LOC_Os06g047703/11transposon protein, putative, Mutator sub-class
LOC_Os07g461403/11Transposable element protein, putative, MuDR
LOC_Os04g514703/11Transposable element protein, putative, MuDR
LOC_Os07g429803/11transposon protein, putative, Mutator sub-class
LOC_Os03g137803/11transposon protein, putative, Mutator sub-class
LOC_Os12g422703/11transposon protein, putative, Mutator sub-class
LOC_Os12g221503/11SWIM zinc finger family protein
LOC_Os11g255203/11transposon protein, putative, Mutator sub-class
LOC_Os01g269163/11Transposable element protein, putative, MuDR
LOC_Os10g181603/11Transposable element protein, putative, MuDR
LOC_Os03g608303/11hypothetical protein
LOC_Os09g236703/11hypothetical protein
LOC_Os01g218403/11transposon protein, putative, Mutator sub-class
LOC_Os04g309903/11transposon protein, putative, Mutator sub-class
LOC_Os06g364703/11transposon protein, putative, Mutator sub-class
LOC_Os04g534803/11transposon protein, putative, Mutator sub-class
LOC_Os06g420103/11Transposable element protein, putative, MuDR
LOC_Os10g247903/11transposon protein, putative, Mutator sub-class
LOC_Os11g062503/11hypothetical protein
LOC_Os03g623503/11hypothetical protein
LOC_Os07g425303/11transposon protein, putative, Mutator sub-class
LOC_Os07g337003/11transposon protein, putative, Mutator sub-class
LOC_Os01g268363/11transposon protein, putative, Mutator sub-class
LOC_Os04g023503/11transposon protein, putative, Mutator sub-class
LOC_Os12g165003/11transposon protein, putative, Mutator sub-class
LOC_Os02g016903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g614603/11hypothetical protein
LOC_Os01g156203/11transposon protein, putative, Mutator sub-class
LOC_Os08g348103/11transposon protein, putative, Mutator sub-class
LOC_Os06g255803/11Transposable element protein, putative, MuDR
LOC_Os02g582403/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g406503/11transposon protein, putative, Mutator sub-class
LOC_Os11g474443/11Transposable element protein, putative, MuDR
LOC_Os03g630303/11transposon protein, putative, Mutator sub-class
LOC_Os02g455503/11transposon protein, putative, Mutator sub-class
LOC_Os06g503203/11transposon protein, putative, Mutator sub-class
LOC_Os05g085003/11transposon protein, putative, Mutator sub-class
LOC_Os12g391503/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g350403/11transposon protein, putative, Mutator sub-class
LOC_Os11g091203/11hypothetical protein
LOC_Os02g117303/11transposon protein, putative, Mutator sub-class
LOC_Os04g183903/11transposon protein, putative, Mutator sub-class
LOC_Os07g125003/11transposon protein, putative, Mutator sub-class
LOC_Os01g369103/11Transposable element protein, putative, MuDR
LOC_Os10g325603/11transposon protein, putative, Mutator sub-class
LOC_Os04g478003/11transposon protein, putative, Mutator sub-class
LOC_Os04g099803/11transposon protein, putative, Mutator sub-class
LOC_Os04g593903/11transposon protein, putative, Mutator sub-class
LOC_Os01g682203/11transposon protein, putative, Mutator sub-class
LOC_Os07g296503/11transposon protein, putative, Mutator sub-class
LOC_Os04g316503/11transposon protein, putative, Mutator sub-class
LOC_Os01g049603/11transposon protein, putative, Mutator sub-class
LOC_Os03g118303/11Transposable element protein, putative, MuDR
LOC_Os09g323903/11transposon protein, putative, Mutator sub-class
LOC_Os02g061103/11transposon protein, putative, Mutator sub-class
LOC_Os06g142903/11transposon protein, putative, Mutator sub-class
LOC_Os01g094903/11transposon protein, putative, Mutator sub-class
LOC_Os05g080803/11transposon protein, putative, Mutator sub-class
LOC_Os05g382403/11transposon protein, putative, Mutator sub-class
LOC_Os04g540603/11transposon protein, putative, Mutator sub-class
LOC_Os03g042903/11Transposable element protein, putative, MuDR
LOC_Os09g124203/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g261203/11transposon protein, putative, Mutator sub-class
LOC_Os06g129003/11transposon protein, putative, Mutator sub-class
LOC_Os03g191603/11transposon protein, putative, Mutator sub-class
LOC_Os07g128603/11transposon protein, putative, Mutator sub-class
LOC_Os11g442403/11Transposable element protein, putative, MuDR
LOC_Os02g033502/11transposon protein, putative, Mutator sub-class
LOC_Os10g286502/11transposon protein, putative, Mutator sub-class
LOC_Os07g281302/11transposon protein, putative, Mutator sub-class
LOC_Os05g068802/11transposon protein, putative, unclassified
LOC_Os10g363802/11transposon protein, putative, Mutator sub-class
LOC_Os10g307402/11transposon protein, putative, Mutator sub-class
LOC_Os06g383602/11hypothetical protein
LOC_Os01g738702/11transposon protein, putative, Mutator sub-class
LOC_Os03g388202/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g369902/11transposon protein, putative, Mutator sub-class
LOC_Os11g444102/11transposon protein, putative, Mutator sub-class
LOC_Os01g470002/11transposon protein, putative, Mutator sub-class
LOC_Os11g442102/11transposon protein, putative, Mutator sub-class
LOC_Os11g178302/11transposon protein, putative, Mutator sub-class
LOC_Os09g378202/11transposon protein, putative, Mutator sub-class
LOC_Os03g527401/11SWIM zinc finger family protein
LOC_Os12g317001/11transposon protein, putative, Mutator sub-class
LOC_Os01g743901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g563401/11hypothetical protein
LOC_Os02g109101/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12080Os.12263.1.S1_at11/111+6568846..6573967uncharacterized plant-specific domain TIGR01589 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22940.5.S1_x_at--1079--699162Chr12:24048573..24048597 (25 bp)
GTACTAGGCTCCTCTCAGCTTGGAG
LOC_Os12g39150
OsAffx.22940.5.S1_x_at--867--855152Chr12:24048593..24048617 (25 bp)
TGGAGGAGCTCCAGAGGCGCACACT
LOC_Os12g39150
OsAffx.22940.5.S1_x_at--501--97157Chr12:24048619..24048643 (25 bp)
AGGAGCAGCCAGAGGTCACACCTGT
LOC_Os12g39150
OsAffx.22940.5.S1_x_at--225--761147Chr12:24049143..24049166 (24 bp)
GGGCAACCTCTTCATATCTTCTTTC
NONE
OsAffx.22940.5.S1_x_at--514--101572Chr11:20575722..20575746 (25 bp)
TATCTTCTTTCCCACTAGCACACAA
LOC_Os11g35880
OsAffx.22940.5.S1_x_at--278--29737Chr11:20575755..20575779 (25 bp)
AATGGAAGCGCCATTCCTTGAGCGT
LOC_Os11g35880
OsAffx.22940.5.S1_x_at--488--63723Chr11:20575795..20576017 (25 bp)
GATCCTTTTGCTGACATATCGTCCA
LOC_Os11g35880
OsAffx.22940.5.S1_x_at--272--101540Chr11:20576009..20576033 (25 bp)
TATCGTCCAATGTGCAACTTCATCG
LOC_Os11g35880
OsAffx.22940.5.S1_x_at--567--32131Chr08:25862097..25862121 (25 bp)
CAAGATCGGACTACCTAAGGCGGAA
LOC_Os08g41140
OsAffx.22940.5.S1_x_at--657--54539Chr11:20576129..20576153 (25 bp)
GAACGTCGAATTGCTGCTGAGGCTT
LOC_Os11g35880
OsAffx.22940.5.S1_x_at--342--5352Chr11:20576793..20576817 (25 bp)
ATCGACAATGTCACTCCATCATATC
LOC_Os11g35880
Target Sequence 
GTACTAGGCTCCTCTCAGCTTGGAGGAGCTCCAGAGGCGCACACTCAGGAGCAGCCAGAGGTCACACCTGTACAGGCAGG
ACGGGTTGGCCGTGCCGTACCCCCGGACCGACTCACATACTCCCAGGGGCACATTAGGGCGCAGGGTAGGAGGGACAGGG
GCAACCTCTTCATATCTTCTTTCCCACTAGCACACAACACACGAAAATGGAAGCGCCATTCCTTGAGCGTCTCAACTGGT
AAAGCGATCCTTTTGCTGACATATCGTCCAATGTGCAACTTCATCGAGTGGGTAGACATGGAGAACCCACAAAACAACGG
AACCCGTGCTTACCCACGTAATGAAACAAGATCGGACTACCTAAGGCGGAAGGATGAGCATGAACGTCGAATTGCTGCTG
AGGCTTTAGAATGGCACGGCAATCCAAGGATGGGTGGATTTACTCGATGGATCGACAATGTCACTCCATCATATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22940.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis