Browse Element(s) Details


Os.37822.2.S2_at

Description gb:AK109524.1
DB_XREF= gi:32994733
TID=Os.37822.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37822 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative endo-beta-1,4-glucanase (P0489G09.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-115-F10, full insert sequence.
FL= gb:AK106863.1 gb:AK109524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1202011/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12040OsAffx.22940.5.S1_x_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.5.S1_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.1.S1_s_at11/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.3.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040Os.35344.18.S1_x_at10/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.2.S1_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.22940.3.S1_x_at8/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12040OsAffx.31552.2.S1_at1/111+6543516..6551069Transposable element protein, putative, MuDR
LOC_Os01g12060Os.14645.1.S1_s_at3/111+6555733..6556179hypothetical protein
LOC_Os01g12070Os.32667.1.S1_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed
LOC_Os01g12070Os.32667.2.S1_x_at11/111+6561499..6564942Glycosyl hydrolase family 9 protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0005618cellular_componentcell wall
GO:0005319molecular_functionlipid transporter activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37822.2.S2_at--445--10731Chr01:6539341..6539365 (25 bp)
TTGCAGCTCACGAACGACGGGTTGG
LOC_Os01g12020
Os.37822.2.S2_at--1019--4552Chr01:6539419..6539443 (25 bp)
GCGCCATAGCCGACCATGTAGCTAA
LOC_Os01g12020
Os.37822.2.S2_at--328--3791Chr01:6539449..6539473 (25 bp)
CTCGGGTTGCTACCCAGGATGTAGT
LOC_Os01g12020
Os.37822.2.S2_at--746--993Chr05:1685506..1685526 (21 bp)
AGGATGTAGTCCACCTGCGACTTGG
NONE
Os.37822.2.S2_at--243--10031Chr01:6539581..6539605 (25 bp)
TAGACGGCCAGCAGGAACGACGCGC
LOC_Os01g12020
Os.37822.2.S2_at--487--1852Chr05:6922466..6922538 (25 bp)
ACGAACTGGAGGTTGTTCCAGCCCT
NONE
Os.37822.2.S2_at--157--10751Chr01:6539623..6539647 (25 bp)
TTGTTCCAGCCCTGGTGGTACATCA
LOC_Os01g12020
Os.37822.2.S2_at--126--5371Chr01:6539709..6539733 (25 bp)
GAAGACGTCGGCGTTCCGCTGGTAC
LOC_Os01g12020
Os.37822.2.S2_at--73--8431Chr01:6539760..6539784 (25 bp)
GGCCTTCCCTTGCAGGAGAAACTAC
LOC_Os01g12020
Os.37822.2.S2_at--254--6931Chr01:6539824..6539848 (25 bp)
GTAGTACTACTCTTGTATCCGACAA
LOC_Os01g12020
Os.37822.2.S2_at--44--2991Chr01:6539849..6539873 (25 bp)
AATGTGGTAATCACTGTAGCATTTC
LOC_Os01g12020
Target Sequence 
TTGCAGCTCACGAACGACGGGTTGGCCCTGATGGAGACGATGGACGCGCCGCGGTGGTGCGCGCGCCGCGGGTACCTCGC
GCCATAGCCGACCATGTAGCTAATCCCCCTCGGGTTGCTACCCAGGATGTAGTCCACCTGCGACTTGGCCAGCGCGACGA
GCTCCGACGCCCGCGCCGCCGGCCCGGCCTGGCACCGCACGACGGCTTGCCCGCGGCCGGCGGCGGCGAGGTGGTCGGCG
TAGACGGCCAGCAGGAACGACGCGCCGGTGACGAACTGGAGGTTGTTCCAGCCCTGGTGGTACATCAGGCCGCCGGGCGT
CCTCCCGACGTTGCCACCGCCGCCGCCCTTGCCGAGGCAGGAGCACGCGAAGACGTCGGCGTTCCGCTGGTACCTCCGCA
GCACGGCGGCGTGCGGCCCGGCCTTCCCTTGCAGGAGAAACTACATCAAAAGGAATGTAAGTATAAGTACAGTGTTGGGG
TGAGTAGTACTACTCTTGTATCCGACAAAATGTGGTAATCACTGTAGCATTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37822.2.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis