Browse Element(s) Details


Os.16133.1.S1_at

Description gb:AK065476.1
DB_XREF= gi:32975494
TID=Os.16133.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.16133 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0489G09.12 (P0489G09.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022D13, full insert sequence.
FL= gb:AK065476.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1196011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11940Os.30557.2.S2_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.2.S1_x_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11940Os.30557.1.S1_at11/111+6491318..6496568TWIN SISTER of FT protein, putative, expressed
LOC_Os01g11946Os.26825.2.S1_x_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11946Os.26825.1.S1_at11/111+6497511..6503888ABC transporter family protein, putative, expressed
LOC_Os01g11952Os.50353.1.S1_at11/111+6504158..6511442PHD finger protein, putative, expressed
LOC_Os01g11960Os.16133.1.S1_at11/111+6514930..6517828PHD-finger family protein, expressed
LOC_Os01g11970NANA1+6520511..6521254hypothetical protein
LOC_Os01g11980Os.43459.1.S1_at9/111+6522334..6524252expressed protein
LOC_Os01g11990Os.30623.1.S1_at11/111+6525599..6528647expressed protein
LOC_Os01g11990Os.51808.1.S1_at8/111+6525599..6528647expressed protein
LOC_Os01g11990Os.53454.1.S1_x_at2/111+6525599..6528647expressed protein
LOC_Os01g12000Os.5066.1.S1_at11/111+6531414..6532631expressed protein
LOC_Os01g12010OsAffx.23211.1.S1_at11/111+6534456..6534698hypothetical protein
LOC_Os01g12020Os.37822.2.S2_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12020Os.37822.2.S1_at11/111+6537810..6539878Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os01g12030Os.37822.1.A2_at4/111+6538773..6541263Glycosyl hydrolase family 9 protein
LOC_Os01g12030Os.32667.2.S1_x_at1/111+6538773..6541263Glycosyl hydrolase family 9 protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16133.1.S1_at--609--4731Chr01:6515430..6515454 (25 bp)
GCTGATTATTTCTGTCCGGATTGCA
LOC_Os01g11960
Os.16133.1.S1_at--68--5511Chr01:6515370..6515394 (25 bp)
GAACACCCCTAACAGTTCAGAGTGA
LOC_Os01g11960
Os.16133.1.S1_at--726--6871Chr01:6515219..6515243 (25 bp)
GTCAAACGGGTTCTGGTGCCGTCAT
LOC_Os01g11960
Os.16133.1.S1_at--716--10311Chr01:6515137..6515161 (25 bp)
TTTCTCTGTGACAATGTGACCTACC
LOC_Os01g11960
Os.16133.1.S1_at--1108--7371Chr01:6515122..6515146 (25 bp)
GTGACCTACCAACTAGAAAGCCTGT
LOC_Os01g11960
Os.16133.1.S1_at--975--5551Chr01:6515107..6515131 (25 bp)
GAAAGCCTGTACTAGGATCCCTATC
LOC_Os01g11960
Os.16133.1.S1_at--629--6371Chr01:6515092..6515116 (25 bp)
GATCCCTATCCGCAATGTAGTATCC
LOC_Os01g11960
Os.16133.1.S1_at--213--2311Chr01:6515065..6515089 (25 bp)
AAAGGCACAAACCAGCGTGTATGTT
LOC_Os01g11960
Os.16133.1.S1_at--512--3871Chr01:6514983..6515007 (25 bp)
CTGTTGTATGTTTAGCCACCGAAGT
LOC_Os01g11960
Os.16133.1.S1_at--699--5651Chr01:6514948..6514972 (25 bp)
GACAGTTCTTGGGACTTTCATCACT
LOC_Os01g11960
Os.16133.1.S1_at--473--8131Chr01:6514937..6514961 (25 bp)
GGACTTTCATCACTTCATAACTCTA
LOC_Os01g11960
Target Sequence 
GCTGATTATTTCTGTCCGGATTGCAAATCAAAACGCAAGAATATCTCCAGTTGAACAAATGAACACCCCTAACAGTTCAG
AGTGAGTTAATTTCCTTGAAAGTCTGTTGAAACTGTGATAGTTGGAACTAATATTTGTCATTTNTNNNNACATGTAGTAT
GTAGGGACTAGTGAGGGTGGTACACTGGTACTGAAACTGTATTGTGATATGGTCAAACGGGTTCTGGTGCCGTCATGTTG
TTTTGTTAGACGTGCTTTAGAAAATAGCATTGTCCATAAACTGTAATCACTATTTTCTCTGTGACAATGTGACCTACCAA
CTAGAAAGCCTGTACTAGGATCCCTATCCGCAATGTAGTATCCACAAAGGCACAAACCAGCGTGTATGTTGTACATAAAC
CATGCATGCATATATGTTGTAAATATTAATTATTTGAAATGCTTATGCTGTTGTATGTTTAGCCACCGAAGTAATGTAGT
TTGACAGTTCTTGGGACTTTCATCACTTCATAACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis