Browse Element(s) Details


Os.53454.1.S1_x_at

Description gb:AK072717.1
DB_XREF= gi:32982740
TID=Os.53454.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53454 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023141D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141D18, full insert sequence.
FL= gb:AK072717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g407603/11expressed protein
LOC_Os01g119902/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40730NANA11+23854106..23858966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40740OsAffx.19282.1.S1_at11/1111+23865633..23866241expressed protein
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40790OsAffx.19284.1.S1_at11/1111+23895377..23896465hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53454.1.S1_x_at--1051--8694Chr11:23882233..23882257 (25 bp)
TGTGCGTCAGCCATCCGTGTGCGGT
LOC_Os11g40760
Os.53454.1.S1_x_at--796--3792Chr02:22428418..22428442 (25 bp)
CTCCCTTCCACTGGTAAGTGATTCG
NONE
Os.53454.1.S1_x_at--40--9795Chr11:23882336..23882476 (25 bp)
TAAGTGATTCGCTCTGCTCCATGTG
LOC_Os11g40760
Os.53454.1.S1_x_at--535--3512Chr01:6526048..6526069 (22 bp)
CATGTGCGTGCGTGGCTTCGAGTTC
LOC_Os01g11990
Os.53454.1.S1_x_at--1052--1311Chr04:25296523..25296547 (25 bp)
AGATGGCGAATTTGAGTAAACTCCG
NONE
Os.53454.1.S1_x_at--206--2552Chr05:29242846..29242870 (25 bp)
AACTCCGGAGCTCTTGAACTTTTGA
NONE
Os.53454.1.S1_x_at--933--10232Chr05:29242866..29242890 (25 bp)
TTTGAAATTGGTTCGGATTCTGCGT
NONE
Os.53454.1.S1_x_at--877--6572Chr05:29242881..29242905 (25 bp)
GATTCTGCGTGCCTTGTTCTTAATC
NONE
Os.53454.1.S1_x_at--64--7294Chr11:23882442..23882466 (25 bp)
GTGCCTTGTTCTTAATCGAGTGTGG
LOC_Os11g40760
Os.53454.1.S1_x_at--735--9372Chr02:22428553..22428577 (25 bp)
TCGAGTGTGGTTTCAATGTACGCGT
NONE
Os.53454.1.S1_x_at--634--8752Chr02:22428569..22428593 (25 bp)
TGTACGCGTGTGTTTCTGGAAGTTC
NONE
Target Sequence 
TGTGCGTCAGCCATCCGTGTGCGGTCCGTGCGAGGCGCCGCTCCGGGCGTGCAGGCTTCCGCGCGCCTCCTTCCTCGCTC
GCCGTCGCCCTCCCTTCCACTGGTAAGTGATTCGCTCTGCTCCATGTGCGTGCGTGGCTTCGAGTTCGAGATGGCGAATT
TGAGTAAACTCCGGAGCTCTTGAACTTTTGAAATTGGTTCGGATTCTGCGTGCCTTGTTCTTAATCGAGTGTGGTTTCAA
TGTACGCGTGTGTTTCTGGAAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53454.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis