Browse Element(s) Details


OsAffx.31410.1.S1_at

Description tigr:9639.m03738
TID=OsAffx.31410.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4077011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40730NANA11+23854106..23858966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40740OsAffx.19282.1.S1_at11/1111+23865633..23866241expressed protein
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40790OsAffx.19284.1.S1_at11/1111+23895377..23896465hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31410.1.S1_at--582--2931Chr11:23883782..23883806 (25 bp)
AAGGCAAGATCCGTCTCTCCCAGGA
LOC_Os11g40770
OsAffx.31410.1.S1_at--745--9491Chr11:23883797..23883821 (25 bp)
TCTCCCAGGAGACGATCGACGCGAT
LOC_Os11g40770
OsAffx.31410.1.S1_at--484--4631Chr11:23883817..23883841 (25 bp)
GCGATCCTCGCCAGGAAGACGGAGC
LOC_Os11g40770
OsAffx.31410.1.S1_at--11--2771Chr11:23883832..23883856 (25 bp)
AAGACGGAGCCTTACCCCAGCGATT
LOC_Os11g40770
OsAffx.31410.1.S1_at--657--4311Chr11:23883858..23883882 (25 bp)
CCTTCGCTACTACCGGAGCTTGAAA
LOC_Os11g40770
OsAffx.31410.1.S1_at--270--5911Chr11:23883873..23883897 (25 bp)
GAGCTTGAAAGACAACCCGGCGTTC
LOC_Os11g40770
OsAffx.31410.1.S1_at--567--4091Chr11:23883954..23883978 (25 bp)
CGACAGGTTGCAGAGGCGGATCCTC
LOC_Os11g40770
OsAffx.31410.1.S1_at--1098--4411Chr11:23883983..23884007 (25 bp)
GCCAGGCGTGGATCCGCAACGAGTT
LOC_Os11g40770
OsAffx.31410.1.S1_at--1034--8391Chr11:23884044..23884068 (25 bp)
GGCCGCCAACTTCACTGCTGTTAAC
LOC_Os11g40770
OsAffx.31410.1.S1_at--1060--1371Chr11:23884191..23884215 (25 bp)
AGACGATGACAATCCTTCTGACGAT
LOC_Os11g40770
OsAffx.31410.1.S1_at--277--8011Chr11:23884221..23884245 (25 bp)
GGAGGCTGCCAAATAATTAACTATG
LOC_Os11g40770
Target Sequence 
AAGGCAAGATCCGTCTCTCCCAGGAGACGATCGACGCGATCCTCGCCAGGAAGACGGAGCCTTACCCCAGCGATTCCCTT
CGCTACTACCGGAGCTTGAAAGACAACCCGGCGTTCCCGCCGGAGTTCTCCGACGACCTCATGCGCACCATCCTCAGCTG
CGCCCGGGAGCACGACAGGTTGCAGAGGCGGATCCTCGGGCGCCAGGCGTGGATCCGCAACGAGTTGGAGGAGAAGGGCT
ATGTCGATGTCGATGAGGATAAGGCCGCCAACTTCACTGCTGTTAACTGGAAGGAGGAGCTCATGACTGACGACGAGGAA
TCCGGCCAAGAGGATTTTGATGTTGACAGTGACACTGAAGATGATGATGATGAGGAGGAGGAGATTTCTGATGAAGAAGA
TATCAACGAAGACGATGACAATCCTTCTGACGATGAGGAGGAGGCTGCCAAATAATTAACTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31410.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis