Browse Element(s) Details


OsAffx.31411.1.S1_at

Description tigr:9639.m03739
TID=OsAffx.31411.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NB-ARC domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4078011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40740OsAffx.19282.1.S1_at11/1111+23865633..23866241expressed protein
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40790OsAffx.19284.1.S1_at11/1111+23895377..23896465hypothetical protein
LOC_Os11g40800Os.53035.1.S1_at11/1111+23913298..23914447expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31411.1.S1_at--635--8011Chr11:23886491..23886515 (25 bp)
GGAGGCAGTAGCATTCTCTAGGCTT
LOC_Os11g40780
OsAffx.31411.1.S1_at--667--8291Chr11:23886471..23886495 (25 bp)
GGCTTGAATTGCTTACCTTTACAGA
LOC_Os11g40780
OsAffx.31411.1.S1_at--1089--1591Chr11:23886309..23886333 (25 bp)
AGCTGCTGCCATGTCTAAAGAAGTT
LOC_Os11g40780
OsAffx.31411.1.S1_at--454--1731Chr11:23886282..23886306 (25 bp)
ACCTTCGTAACTGCCCAAAACTGAG
LOC_Os11g40780
OsAffx.31411.1.S1_at--39--2431Chr11:23886266..23886290 (25 bp)
AAAACTGAGGGCTTTCCCGCGACAG
LOC_Os11g40780
OsAffx.31411.1.S1_at--1090--4291Chr11:23886166..23886190 (25 bp)
CCATTCCTTTCTGATAACCTTTCGA
LOC_Os11g40780
OsAffx.31411.1.S1_at--580--1331Chr11:23886120..23886144 (25 bp)
AGAGGATCTCTAATCTTCCACAGCT
LOC_Os11g40780
OsAffx.31411.1.S1_at--624--10691Chr11:23886105..23886129 (25 bp)
TTCCACAGCTGAGGGATCTGCGTGT
LOC_Os11g40780
OsAffx.31411.1.S1_at--556--9971Chr11:23886081..23886105 (25 bp)
TAGCCCGTTGCCCAAACTTGAGGTG
LOC_Os11g40780
OsAffx.31411.1.S1_at--237--7091Chr11:23886055..23886079 (25 bp)
GTCAAGGAGTTTGGCTGTCTGCAGC
LOC_Os11g40780
OsAffx.31411.1.S1_at--822--1391Chr11:23886005..23886029 (25 bp)
AGACGTGTCTTCAGTATGGGTGGCC
LOC_Os11g40780
Target Sequence 
GGAGGCAGTAGCATTCTCTAGGCTTGAATTGCTTACCTTTACAGATATGCCCAATTGGGAGGAGTGGTCCTTTGTTGAAG
ACGATGATGAAGCAGCAGCAACAGCAGAGCCTGTAGCAAATGAAGGGGAGGCGAATGATGCTTCTGCAAAGCCGAAAGGG
GAAGCCCCAGTTGGAAGGTTGCAGCTGCTGCCATGTCTAAAGAAGTTACACCTTCGTAACTGCCCAAAACTGAGGGCTTT
CCCGCGACAGCTTGGGAAGGTGGCCACCAGCTTGAAGGTGCTCACAATAGGTGAAGCAAGATGCTTGAAAGTTGTGGAGG
ACTTCCCATTCCTTTCTGATAACCTTTCGATCATTGGATGTAAAGGTCTGAAGAGGATCTCTAATCTTCCACAGCTGAGG
GATCTGCGTGTAGCCCGTTGCCCAAACTTGAGGTGTGTCAAGGAGTTTGGCTGTCTGCAGCAGCTGTGGCTGGGCGTGGG
TATGCAAGACGTGTCTTCAGTATGGGTGGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31411.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis