Browse Element(s) Details


OsAffx.19283.1.S1_at

Description tigr:9639.m03736
TID=OsAffx.19283.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to citrate (si)-synthase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4075010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g40720OsAffx.22848.4.S1_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40720OsAffx.22848.4.S1_x_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40720OsAffx.22848.3.S1_x_at2/1111+23852705..23853913retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40730NANA11+23854106..23858966retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g40740OsAffx.19282.1.S1_at11/1111+23865633..23866241expressed protein
LOC_Os11g40750OsAffx.19283.1.S1_at10/1111+23872620..23879307hypothetical protein
LOC_Os11g40760Os.51808.1.S1_at11/1111+23881605..23882716expressed protein
LOC_Os11g40760Os.53454.1.S1_x_at3/1111+23881605..23882716expressed protein
LOC_Os11g40770OsAffx.31410.1.S1_at11/1111+23883708..23884374expressed protein
LOC_Os11g40780OsAffx.31411.1.S1_at11/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40780OsAffx.19384.1.S1_x_at1/1111+23885930..23889094NB-ARC domain containing protein
LOC_Os11g40790OsAffx.19284.1.S1_at11/1111+23895377..23896465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006099biological_processtricarboxylic acid cycle
GO:0005739cellular_componentmitochondrion
GO:0003878molecular_functionATP citrate synthase activity
GO:0004108molecular_functioncitrate (Si)-synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19283.1.S1_at--978--6831Chr11:23875011..23875035 (25 bp)
GTTTCGCCGGACCATTGCATGGCAT
LOC_Os11g40750
OsAffx.19283.1.S1_at--558--7371Chr11:23874774..23874798 (25 bp)
GTGACATTAGAACTGATCTGCTCAA
LOC_Os11g40750
OsAffx.19283.1.S1_at--407--5351Chr11:23874213..23874237 (25 bp)
GAAGTTGTGCCTCCGATGTCGCTGA
LOC_Os11g40750
OsAffx.19283.1.S1_at--1115--751Chr11:23874203..23874222 (20 bp)
ATGTCGCTGAGCCTAGCAAGTCGAA
LOC_Os11g40750
OsAffx.19283.1.S1_at--231--2371Chr11:23873914..23873938 (25 bp)
AAAGCCTGTCTACCTCTATTTGTAT
LOC_Os11g40750
OsAffx.19283.1.S1_at--60--6931Chr11:23873893..23873917 (25 bp)
GTATGTATTTCACTATTCTTCGGAG
LOC_Os11g40750
OsAffx.19283.1.S1_at--6--3591Chr11:23873876..23873900 (25 bp)
CTTCGGAGTTTTGAGGACCATTGGA
LOC_Os11g40750
OsAffx.19283.1.S1_at--502--10091NONE
TAGGATCTCAGATATCTTGCCCACC
NONE
OsAffx.19283.1.S1_at--989--5611Chr11:23873160..23873184 (25 bp)
GACAACACCCTCTCGAATATTGTGA
LOC_Os11g40750
OsAffx.19283.1.S1_at--1064--8111Chr11:23872744..23872767 (24 bp)
GGACTCCACATCAAGTTCTCATGAA
LOC_Os11g40750
OsAffx.19283.1.S1_at--554--2271Chr11:23872714..23872738 (25 bp)
AAATCCCAGCTGAGAAGTTCCATGA
LOC_Os11g40750
Target Sequence 
GTTTCGCCGGACCATTGCATGGCATGTCTAATCAGGAAGTGCTGTTGTGGATCAAACCTATAACTGGTCAGATTGGTAGT
GACATTAGAACTGATCTGCTCAAAGAGTGTGTGGAAAACACTAAACAGTGGAAAGGTATCTCAGTATATCTATTTGAAGA
GGAGATCTTCAAGTTGTATGAAGTTGTGCCTCCGATGTCGCTGAGCCTAGCAAGTCGAATAGAAAATCTATTTCAGAACG
AGTACTTAAGTAAAGCCTGTCTACCTCTATTTGTATGTATTTCACTATTCTTCGGAGTTTTGAGGACCATTGGAGTAGGA
TCTCAGATATCTTGCCCACCTTATCAGGTGAAGGATAGGAGAGTGCTTGACAACACCCTCTCGAATATTGTGAAATATGG
TGTTCCTGTAGTTTTTATCAATGAAGAGATTTTGAAGGCACGGACTCCACATCAAGTTCTCATGAAAGTTGAAATCCCAG
CTGAGAAGTTCCATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19283.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis