Browse Element(s) Details


OsAffx.22848.4.S1_x_at

Description gb:NM_197463.1
DB_XREF= gi:37536285
TID=OsAffx.22848.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0034L04.35), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3837011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g362393/11retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g387103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g417403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g278703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g630903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g636603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g274903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g589203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g423643/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g080402/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g034602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g185202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g187602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g453702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g297002/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g173702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g562602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g468802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g407202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g381802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g437802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g015341/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g047201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g612701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g077501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g287241/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g405701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g350401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g476101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g036301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g404701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g310701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g344901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g535901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g592501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g360501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g257701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g239801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g036001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g112201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g115901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g733201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g380301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g438001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g294901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g635501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g081501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g353901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g433901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g505101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g462401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g067701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g366201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g027801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g063101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g454401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g550201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g175101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g225701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g014301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g536501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g526901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g359301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g302001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g048601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g434501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g069201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g361001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g068301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g38270OsAffx.30475.3.S1_s_at11/1110+20148368..20149879ATP synthase alpha chain, putative, expressed
LOC_Os10g38292OsAffx.22955.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.22955.2.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32209.1.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.26770.2.S1_x_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46208.1.S1_s_at11/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292OsAffx.32208.1.S1_x_at10/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292Os.46135.1.S1_x_at6/1110+20149896..20153691Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314NANA10+20155218..20156398Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340Os.9013.1.S1_at11/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340Os.46634.1.S1_x_at1/1110+20158943..20160193glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350Os.46635.1.S1_x_at11/1110+20163648..20164516glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360Os.13015.1.S1_at10/1110+20168320..20169412Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370OsAffx.22848.4.S1_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370OsAffx.22848.4.S1_x_at11/1110+20173318..20179339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38386NANA10+20182358..20182789retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38402NANA10+20185594..20192256retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38420NANA10+20198629..20199851retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38440OsAffx.18568.1.S1_at10/1110+20202693..20204410transposon protein, putative, unclassified
LOC_Os10g38440OsAffx.14234.1.S1_at2/1110+20202693..20204410transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22848.4.S1_x_at--901--37129Chr11:9658533..9658557 (25 bp)
CTAGCGGGTACGACTCCATCTGGGT
LOC_Os11g17370
OsAffx.22848.4.S1_x_at--644--7971Chr10:20178631..20178655 (25 bp)
GGATCGACTCACGAAATCGGCACAT
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--753--5811Chr10:20178709..20178733 (25 bp)
GACCCATGTCGTGTGTCGATTTGGT
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--341--9431Chr10:20178717..20178741 (25 bp)
TCGTGTGTCGATTTGGTTGTCCCAA
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--940--7455Chr10:20178721..20178745 (25 bp)
GTGTCGATTTGGTTGTCCCAAGAAG
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--335--10819Chr10:20178733..20178757 (25 bp)
TTGTCCCAAGAAGATTGTGTCGGAT
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--776--67564Chr12:18650811..18651024 (25 bp)
GTTCACCTCAAGTTATCAGGCCAGC
LOC_Os12g31070
OsAffx.22848.4.S1_x_at--1007--9771Chr10:20179045..20179069 (25 bp)
TAAGGTTGGCGAAGCACTGGTGTTC
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--69--6371Chr10:20179111..20179135 (25 bp)
GATCCGACAATGTTTAAAGACAACT
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--314--2291Chr10:20179126..20179150 (25 bp)
AAAGACAACTCAGAACCGTCAGAAG
LOC_Os10g38370
OsAffx.22848.4.S1_x_at--515--8731Chr10:20179186..20179210 (25 bp)
TGAAAAAGGAGATCTTGTGTACTTG
LOC_Os10g38370
Target Sequence 
CTAGCGGGTACGACTCCATCTGGGTAATCGTGGATCGACTCACGAAATCGGCACATTTCGTGCCAGCGAAAACCACCTTT
GATGGAAAGAAACTGGCAGAACTCTACATGACCCATGTCGTGTGTCGATTTGGTTGTCCCAAGAAGATTGTGTCGGATCG
AGGCACTCAGTTCACCTCAAGTTATCAGGCCAGCATTCAGATGTCGCCGAATGAGGCAATGTTCGGAAGAAAGTGCCGCA
CTCCCTTGTGCTGGAATAAGGTTGGCGAAGCACTGGTGTTCGGTCCTGACATACTCAAGGCAGCAGAAGAACAAGTTAAG
CTGATCCGACAATGTTTAAAGACAACTCAGAACCGTCAGAAGAATTACGCTGACAATCGGAGGCGTGACCTTGAGTTTGA
AAAAGGAGATCTTGTGTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22848.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis