Browse Element(s) Details

OsAffx.32209.1.S1_x_at

Description

gb:X15901.1
DB_XREF= gi:11957
GEN=atpH
TID=OsAffx.32209.1
CNT=1
FEA=DNA_20
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATPase III subunit (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=ATPase III subunit
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g38292	11/11	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g21230	11/11	ATP synthase subunit C family protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g38210	OsAffx.26050.13.S1_x_at	5/11	10	+	20135104..20135529	NAD, putative
LOC_Os10g38229	Os.26751.1.S1_s_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38229	OsAffx.32214.1.S1_x_at	11/11	10	+	20142839..20145429	Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_x_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	OsAffx.32213.1.S1_s_at	11/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38248	Os.26751.2.S1_at	7/11	10	+	20146442..20147547	Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g38270	OsAffx.30475.3.S1_s_at	11/11	10	+	20148368..20149879	ATP synthase alpha chain, putative, expressed
LOC_Os10g38292	OsAffx.22955.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.22955.2.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32209.1.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.26770.2.S1_x_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46208.1.S1_s_at	11/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	OsAffx.32208.1.S1_x_at	10/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38292	Os.46135.1.S1_x_at	6/11	10	+	20149896..20153691	Chloroplast ATP synthase a chain precursor, putative, expressed
LOC_Os10g38314	NA	NA	10	+	20155218..20156398	Glutathione S-transferase, N-terminal domain containing protein
LOC_Os10g38340	Os.9013.1.S1_at	11/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38340	Os.46634.1.S1_x_at	1/11	10	+	20158943..20160193	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38350	Os.46635.1.S1_x_at	11/11	10	+	20163648..20164516	glutathione S-transferase GSTU6, putative, expressed
LOC_Os10g38360	Os.13015.1.S1_at	10/11	10	+	20168320..20169412	Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g38370	OsAffx.22848.4.S1_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g38370	OsAffx.22848.4.S1_x_at	11/11	10	+	20173318..20179339	retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.32209.1.S1_x_at--599--7	2	Chr10:10507794..10507818 (25 bp)	ATTGCTGCTGGATTGGCCGTAGGTC	LOC_Os10g21230
OsAffx.32209.1.S1_x_at--227--857	2	Chr10:10507802..10507826 (25 bp)	TGGATTGGCCGTAGGTCTTGCTTCT	LOC_Os10g21230
OsAffx.32209.1.S1_x_at--24--715	2	Chr10:10507816..10507840 (25 bp)	GTCTTGCTTCTATTGGGCCTGGAGT	LOC_Os10g21230
OsAffx.32209.1.S1_x_at--866--447	5	Chr12:20621517..20621541 (25 bp)	GCCTGGAGTTGGTCAAGGTACTGCT	NONE
OsAffx.32209.1.S1_x_at--155--1085	5	Chr12:20621525..20621549 (25 bp)	TTGGTCAAGGTACTGCTGCAGGACA	NONE
OsAffx.32209.1.S1_x_at--412--475	5	Chr12:20621539..20621563 (25 bp)	GCTGCAGGACAAGCTGTAGAAGGTA	NONE
OsAffx.32209.1.S1_x_at--779--531	5	Chr12:20621557..20621581 (25 bp)	GAAGGTATTGCGAGACAGCCAGAAG	NONE
OsAffx.32209.1.S1_x_at--975--503	3	Chr10:10507941..10507965 (25 bp)	GCAGAAGGTAAAATACGCGGTACTT	LOC_Os10g21230
OsAffx.32209.1.S1_x_at--992--181	3	Chr10:10507955..10507979 (25 bp)	ACGCGGTACTTTATTGCTTAGTCTA	LOC_Os10g21230
OsAffx.32209.1.S1_x_at--36--1073	4	Chr12:20621608..20621632 (25 bp)	TTGCTTAGTCTAGCTTTTATGGAAG	NONE
OsAffx.32209.1.S1_x_at--980--317	4	Chr12:20621639..20621663 (25 bp)	CAATTTATGGACTAGTTGTGGCACT	NONE

Target Sequence

ATTGCTGCTGGATTGGCCGTAGGTCTTGCTTCTATTGGGCCTGGAGTTGGTCAAGGTACTGCTGCAGGACAAGCTGTAGA
AGGTATTGCGAGACAGCCAGAAGCAGAAGGTAAAATACGCGGTACTTTATTGCTTAGTCTAGCTTTTATGGAAGCTTTAA
CAATTTATGGACTAGTTGTGGCACT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis