Browse Element(s) Details


Os.26751.2.S1_at

Description gb:AK119250.1
DB_XREF= gi:37988873
TID=Os.26751.2
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) photosystem I P700 chlorophyll A apoprotein A1 (P0557A01.15), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-121-H03, full insert sequence.
FL= gb:AK119250.1 gb:AK059927.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1675011/11Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g382487/11Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16730Os.46404.1.S1_x_at5/114+9089112..9089957Photosystem Q, putative
LOC_Os04g16740OsAffx.30475.3.S1_s_at11/114+9103443..9105093ATP synthase alpha chain, putative, expressed
LOC_Os04g16750OsAffx.32212.1.S1_x_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750Os.26751.2.S1_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_s_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_x_at6/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009538cellular_componentphotosystem I reaction center
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26751.2.S1_at--168--10273Chr10:20147332..20147356 (25 bp)
TTTGTTGTACTGTATCAGCACCTAG
LOC_Os10g38248
Os.26751.2.S1_at--1061--6895Chr10:20147343..20147367 (25 bp)
GTATCAGCACCTAGTTCATTACTCT
LOC_Os10g38248
Os.26751.2.S1_at--477--3694Chr10:20147353..20147377 (25 bp)
CTAGTTCATTACTCTTGATGGAGGG
LOC_Os10g38248
Os.26751.2.S1_at--359--7653Chr10:20147377..20147401 (25 bp)
GGGAGGATCCGCCTTCTTAGATTTC
LOC_Os10g38248
Os.26751.2.S1_at--468--6373Chr10:20147382..20147406 (25 bp)
GATCCGCCTTCTTAGATTTCTTTTT
LOC_Os10g38248
Os.26751.2.S1_at--861--9514Chr10:20147422..20147446 (25 bp)
TCTAGGATTAGAACCGTATACTTGG
LOC_Os10g38248
Os.26751.2.S1_at--429--6934Chr10:20147446..20147470 (25 bp)
GTAGATAGTAGGAACGGCACATTAT
LOC_Os10g38248
Os.26751.2.S1_at--843--9953Chr10:20147789..20147813 (25 bp)
TACCCTTTCGTATTTGTATGGATTT
NONE
Os.26751.2.S1_at--372--833Chr11:4628940..4628964 (25 bp)
ATGGATTTCTGGAATTGATGATCGT
NONE
Os.26751.2.S1_at--133--8873Chr10:20147821..20147845 (25 bp)
TGATGATCGTAGAAGAGCCCTCTTT
NONE
Os.26751.2.S1_at--1155--1653Chr11:4628972..4628996 (25 bp)
AGCCCTCTTTACCATTCTGTATAAA
NONE
Target Sequence 
TTTGTTGTACTGTATCAGCACCTAGTTCATTACTCTTGATGGAGGGGGAGGATCCGCCTTCTTAGATTTCTTTTTCTATT
TATTTTTCNATCTAGGATTAGAACCGTATACTTGGTAGATAGTAGGAACGGCACATTATGNCAAAAAAAANGTTTGATTC
AGAGAGAGAGGAAGCGGCAGAAATTAGAACNAGAAATATCATTTGATTCGTCGATCTTNAAAAAAAAAGATAAGAAGCAA
AGTTTACCCTTTGAGTTTGAGTGAAAAAACGAAAATGCGAGAAAAATTGCAATCCCTGCCACGTAATAGTGCACCGACAC
GCCTTCATCGACGTTGTTTTTTGACCGGAAGACCTAGAGCTAACTATCGAGACTTTGGGCTATCCGGACACATACTTCGA
GAAATGGTTTATGCATGTTTGTTACCGGGTGCAACAAGATCCAGTTGGTAAGGATAAAATACCCTTTCGTATTTGTATGG
ATTTCTGGAATTGATGATCGTAGAAGAGCCCTCTTTACCATTCTGTATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26751.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis