Browse Element(s) Details


OsAffx.32241.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32241.1
CNT=1
FEA=DNA_92
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=NADH dehydrogenase 49kDa protein (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=NADH dehydrogenase 49kDa protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2134010/11NAD, putative
LOC_Os04g1672010/11ribosomal protein S15 containing protein
LOC_Os07g413007/11Respiratory-chain NADH dehydrogenase, 49 Kd subunit family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g21330OsAffx.32331.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.2.S1_s_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32332.1.S1_x_at11/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32333.1.S1_x_at10/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330OsAffx.32334.1.S1_x_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21330Os.26455.1.S1_at5/1110+10549879..10552113DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g21340OsAffx.32219.1.S1_x_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32221.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340Os.26596.1.S1_s_at11/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32241.1.S1_x_at10/1110+10574530..10578117NAD, putative
LOC_Os10g21340OsAffx.32220.1.S1_s_at9/1110+10574530..10578117NAD, putative
LOC_Os10g21350OsAffx.242.1.S1_at11/1110+10590023..10594592retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g21360Os.15305.1.S1_at11/1110+10600802..10607988N-dimethylguanosine tRNA methyltransferase, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0006412biological_processprotein biosynthesis
GO:0009772biological_processphotosynthetic electron transport in photosystem II
GO:0045333biological_processcellular respiration
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0003735molecular_functionstructural constituent of ribosome
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0003959molecular_functionNADPH dehydrogenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32241.1.S1_x_at--787--8417Chr10:10577596..10577620 (25 bp)
GGCCCCATGTTACGAGCTTCTGGAA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--105--5937Chr10:10577609..10577633 (25 bp)
GAGCTTCTGGAATACAATGGGATCT
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--858--2817Chr10:10577639..10577663 (25 bp)
AAGTTGATCTTTACGAGTCTTACAA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--620--7676Chr10:10577699..10577723 (25 bp)
GGGATTCATTAGCACGCTATTTAGT
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--465--3335Chr10:10577711..10577735 (25 bp)
CACGCTATTTAGTACGAATCGGTGA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--228--8894Chr12:5628830..5628948 (25 bp)
TGAGAATTTAGAAGTCCGACGCTTT
NONE
OsAffx.32241.1.S1_x_at--550--3676Chr10:10577911..10577935 (25 bp)
CTTTATGCAAGAGTGGAAGCCCCAA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--1013--1297Chr10:10577964..10577988 (25 bp)
AGATGATAGTCTTTTCCCCTGGAGA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--279--6018Chr10:10577985..10578009 (25 bp)
GAGATGGAAAATTCGTCCACCCGGT
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--290--9034Chr10:10578020..10578044 (25 bp)
TGCAAATTCTTCCTCAGCTAGTCAA
LOC_Os10g21340
OsAffx.32241.1.S1_x_at--17--5617Chr10:10578051..10578075 (25 bp)
GAAATTGGCTGATATCATGACGATA
LOC_Os10g21340
Target Sequence 
GGCCCCATGTTACGAGCTTCTGGAATACAATGGGATCTTCGTAAAGTTGATCTTTACGAGTCTTACAATCAATTCGATTG
GAAAGTCCAATGGCAAAAAGAAGGGGATTCATTAGCACGCTATTTAGTACGAATCGGTGAAATGAGGGAATCCATCAAAA
TTATTCAACAGGCTGTAGAAAAAATTCCTGGGGGCCCTTATGAGAATTTAGAAGTCCGACGCTTTAAGAAAGCAAAGAAT
TCCGAATGGAATGATTTTGAATATCGATTTCTTGGTAAAAAACCTTCACCCAATTTTGAATTGTCAAAACAAGAGCTTTA
TGCAAGAGTGGAAGCCCCAAAAGGTGAATTAGGAATTTATCTGGTAGGAGATGATAGTCTTTTCCCCTGGAGATGGAAAA
TTCGTCCACCCGGTTTTATTAATTTGCAAATTCTTCCTCAGCTAGTCAAAAAAATGAAATTGGCTGATATCATGACGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32241.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis