Browse Element(s) Details


OsAffx.32331.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpoA
TID=OsAffx.32331.1
CNT=1
FEA=DNA_59
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase alpha subunit (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=RNA polymerase alpha subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1525011/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os10g2133011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os04g1679011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g5794411/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os06g3970010/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g227107/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os09g079103/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g513401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15240OsAffx.32220.1.S1_s_at10/118+9236596..9238516ribosomal protein S15 containing protein
LOC_Os08g15250Os.26455.2.S1_s_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32331.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32332.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32333.1.S1_x_at7/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32334.1.S1_x_at5/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15260Os.26592.2.A1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.1.S1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.2.A1_x_at10/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.3.S1_x_at9/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15270OsAffx.32314.1.S1_at7/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15270Os.48031.1.S1_x_at6/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15280OsAffx.32260.1.S1_at11/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15280Os.29056.1.S1_s_at8/118+9276495..9277418Apocytochrome f precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32331.1.S1_x_at--481--10736Chr08:9262116..9262140 (25 bp)
TTGACAGAACCCACGGATTTCCGTA
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--240--6016Chr08:9262157..9262181 (25 bp)
GAGAGATCGCGGATATCACACGGAA
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--179--298Chr08:9262215..9262239 (25 bp)
ATAGATGCTGTATCCATGCCTGTTC
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--233--6917Chr08:9262224..9262248 (25 bp)
GTATCCATGCCTGTTCGAAATGTGA
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--359--9818Chr08:9262327..9262351 (25 bp)
TAACCCCTAAGGAAGCGCTTTATGA
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--744--1658Chr08:9262340..9262364 (25 bp)
AGCGCTTTATGAGGCTTCTCGTAAT
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--864--10358Chr08:9262373..9262397 (25 bp)
TTTATTTCTTCCTTTTCTTCACACG
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--258--1439Chr08:9262532..9262556 (25 bp)
AGAACTGCCTTCTAGAACGTATAAT
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--298--2435Chr08:9262563..9262587 (25 bp)
AAAAGGGCCAATATCCATACACTAT
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--215--3576Chr08:9262578..9262602 (25 bp)
CATACACTATTGGACCTTTTGAGTA
LOC_Os08g15250
OsAffx.32331.1.S1_x_at--187--818Chr12:3115439..3115463 (25 bp)
ATGGGACACTCTAGAGAAGCATCTC
NONE
Target Sequence 
TTGACAGAACCCACGGATTTCCGTATTGAGTTACGGATCAAGAGAGATCGCGGATATCACACGGAAGTCAGAAAGAACAC
TCAAGATGGAAGTTATCCTATAGATGCTGTATCCATGCCTGTTCGAAATGTGAATTATAGTATTTTTGCTTGTGGGAATG
GAAATGCAAAATATGAGATACTTTTTCTAGAAATATGGACCAATGGAAGTTTAACCCCTAAGGAAGCGCTTTATGAGGCT
TCTCGTAATTTGATTGATTTATTTCTTCCTTTTCTTCACACGGAGGAAGAGGGTACTCGTTTCCAAGAAAATAAAAACAG
GTTTACTTCCCCCCTTTTAAGCTTTCAAAAAAGATTAACTAATCTAAAGAAAAACAAAAAAAGAATTCCATTGAATTGTA
TTTTTATTGATCAATTAGAACTGCCTTCTAGAACGTATAATTGTCTCAAAAGGGCCAATATCCATACACTATTGGACCTT
TTGAGTAAGACGGAAGAAGATCTGATGAGAATTGACAGTTTTCGTATGCAAGATGGAAAACAGATATGGGACACTCTAGA
GAAGCATCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32331.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis