Browse Element(s) Details


Os.26455.2.S1_s_at

Description gb:NM_195997.1
DB_XREF= gi:37533353
TID=Os.26455.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.26455 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative RNA polymerase alpha subunit (OSJNAb0075K12.31), mRNA.
PROD=putative RNA polymerase alpha subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1525011/11DNA-directed RNA polymerase alpha chain, putative
LOC_Os05g5134011/11hypothetical protein
LOC_Os04g1679011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os01g5794411/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os10g2133011/11DNA-directed RNA polymerase alpha chain, putative, expressed
LOC_Os06g3970011/11DNA-directed RNA polymerase alpha chain, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15240OsAffx.32220.1.S1_s_at10/118+9236596..9238516ribosomal protein S15 containing protein
LOC_Os08g15250Os.26455.2.S1_s_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32331.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32332.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32333.1.S1_x_at7/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32334.1.S1_x_at5/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15260Os.26592.2.A1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.1.S1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.2.A1_x_at10/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.3.S1_x_at9/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15270OsAffx.32314.1.S1_at7/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15270Os.48031.1.S1_x_at6/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15280OsAffx.32260.1.S1_at11/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15280Os.29056.1.S1_s_at8/118+9276495..9277418Apocytochrome f precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0000312cellular_componentplastid small ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26455.2.S1_s_at--772--2539Chr08:9262534..9262558 (25 bp)
AACTGCCTTCTAGAACGTATAATTG
LOC_Os08g15250
Os.26455.2.S1_s_at--155--1999Chr08:9262535..9262559 (25 bp)
ACTGCCTTCTAGAACGTATAATTGT
LOC_Os08g15250
Os.26455.2.S1_s_at--1134--3819Chr08:9262536..9262560 (25 bp)
CTGCCTTCTAGAACGTATAATTGTC
LOC_Os08g15250
Os.26455.2.S1_s_at--21--4459Chr08:9262538..9262562 (25 bp)
GCCTTCTAGAACGTATAATTGTCTC
LOC_Os08g15250
Os.26455.2.S1_s_at--372--3659Chr08:9262540..9262564 (25 bp)
CTTCTAGAACGTATAATTGTCTCAA
LOC_Os08g15250
Os.26455.2.S1_s_at--833--5439Chr08:9262546..9262570 (25 bp)
GAACGTATAATTGTCTCAAAAGGGC
LOC_Os08g15250
Os.26455.2.S1_s_at--587--18Chr08:9262548..9262572 (25 bp)
ACGTATAATTGTCTCAAAAGGGCCA
LOC_Os08g15250
Os.26455.2.S1_s_at--776--3998Chr08:9262549..9262573 (25 bp)
CGTATAATTGTCTCAAAAGGGCCAA
LOC_Os08g15250
Os.26455.2.S1_s_at--1141--6878Chr08:9262550..9262574 (25 bp)
GTATAATTGTCTCAAAAGGGCCAAT
LOC_Os08g15250
Os.26455.2.S1_s_at--1134--9737Chr08:9262553..9262577 (25 bp)
TAATTGTCTCAAAAGGGCCAATATC
LOC_Os08g15250
Os.26455.2.S1_s_at--821--36Chr08:9262555..9262579 (25 bp)
ATTGTCTCAAAAGGGCCAATATCCA
LOC_Os08g15250
Target Sequence 
AACTGCCTTCTAGAACGTATAATTGTCTCAAAAGGGCCAATATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26455.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis