Browse Element(s) Details


OsAffx.32314.1.S1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32314.1
CNT=1
FEA=DNA_52
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF216 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g152707/11ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os12g105907/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os06g397207/11ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os10g213002/11ATP-dependent Clp protease proteolytic subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g15250Os.26455.2.S1_s_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32331.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32332.1.S1_x_at11/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32333.1.S1_x_at7/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15250OsAffx.32334.1.S1_x_at5/118+9260664..9262715DNA-directed RNA polymerase alpha chain, putative
LOC_Os08g15260Os.26592.2.A1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.1.S1_s_at11/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.2.A1_x_at10/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15260Os.26592.3.S1_x_at9/118+9266450..9268148Photosystem II P680 chlorophyll A apoprotein, putative, expressed
LOC_Os08g15270OsAffx.32314.1.S1_at7/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15270Os.48031.1.S1_x_at6/118+9269071..9269418ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g15280OsAffx.32260.1.S1_at11/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15280Os.29056.1.S1_s_at8/118+9276495..9277418Apocytochrome f precursor, putative
LOC_Os08g15290NANA8+9292658..9295196retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008236molecular_functionserine-type peptidase activity
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32314.1.S1_at--585--2251NONE
AAATATATATACAACATGCCTAGGA
NONE
OsAffx.32314.1.S1_at--898--10191NONE
TATATACAACATGCCTAGGAATAGC
NONE
OsAffx.32314.1.S1_at--299--9191NONE
TGCCTAGGAATAGCCGCGTCCATGC
NONE
OsAffx.32314.1.S1_at--566--10091NONE
TAGGAATAGCCGCGTCCATGCCGTC
NONE
OsAffx.32314.1.S1_at--855--6313Chr08:9269350..9269374 (25 bp)
GATGAAATGCTTGACGAGCACTGCG
LOC_Os08g15270
OsAffx.32314.1.S1_at--119--5593Chr08:9269353..9269377 (25 bp)
GAAATGCTTGACGAGCACTGCGATA
LOC_Os08g15270
OsAffx.32314.1.S1_at--960--3013Chr08:9269355..9269379 (25 bp)
AATGCTTGACGAGCACTGCGATACT
LOC_Os08g15270
OsAffx.32314.1.S1_at--86--4913Chr08:9269358..9269382 (25 bp)
GCTTGACGAGCACTGCGATACTGAT
LOC_Os08g15270
OsAffx.32314.1.S1_at--64--10773Chr08:9269360..9269384 (25 bp)
TTGACGAGCACTGCGATACTGATCC
LOC_Os08g15270
OsAffx.32314.1.S1_at--509--5774Chr08:9269362..9269386 (25 bp)
GACGAGCACTGCGATACTGATCCAG
LOC_Os08g15270
OsAffx.32314.1.S1_at--1029--4074Chr08:9269364..9269388 (25 bp)
CGAGCACTGCGATACTGATCCAGTG
LOC_Os08g15270
Target Sequence 
AAATATATATACAACATGCCTAGGAATAGCCGCGTCCATGCCGTCCTTCATTCTGCTTGGAGGAGAACCCACCAAGCGTA
TAGCATTCCCCCACGCGAGGATTATGCTTCACCAACCTGCTAGTGCTTATTATCGGGCAAGAACACCAGAATTTTTACTA
GAAGTGGAAGAGTTACACAAAGTTCGCGAAATGATCACAAGGGTTTATGCACTAAGAACAGGCAAGCCTTTTTGGGTTGT
ATCCGAAGACATGGAAAGGGATGTTTTTATGTCAGCAGACGAAGCCAAAGCTTATGGACTTGTCGATATTGTAGGGGATG
AAATGCTTGACGAGCACTGCGATACTGATCCAGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32314.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis