Browse Element(s) Details


Os.48031.1.S1_x_at

Description gb:NM_195995.1
DB_XREF= gi:37533349
TID=Os.48031.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48031 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ATP-dependent Clp protease proteolytic subunit (OSJNAb0075K12.29), mRNA.
PROD=putative ATP-dependent Clp protease proteolyticsubunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1059010/11ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os10g213007/11ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os06g397206/11ATP-dependent Clp protease proteolytic subunit, putative
LOC_Os08g152706/11ATP-dependent Clp protease proteolytic subunit, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008236molecular_functionserine-type peptidase activity
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48031.1.S1_x_at--1104--6675Chr08:9268886..9268910 (25 bp)
GTTGCGAGGTCACGAATCATATTAC
NONE
Os.48031.1.S1_x_at--296--2133Chr08:9268909..9268933 (25 bp)
ACAGGTCTCATGGTATATCTCAGTA
NONE
Os.48031.1.S1_x_at--676--4256Chr08:9268976..9269000 (25 bp)
CCGGCGGGTGGTTAATCTCAGGAAT
NONE
Os.48031.1.S1_x_at--67--1274Chr08:9269034..9269058 (25 bp)
AGATATATATACAATATGCCTCGGA
NONE
Os.48031.1.S1_x_at--407--875Chr08:9269071..9269095 (25 bp)
ATGGCGTCCTTCATTCTGCTTGGAG
NONE
Os.48031.1.S1_x_at--962--1795Chr08:9269126..9269150 (25 bp)
ACGCGAGGATTATGCTTCACCAACC
LOC_Os08g15270
Os.48031.1.S1_x_at--75--2635Chr08:9269147..9269171 (25 bp)
AACCTGCTAGTGCTTATTATCGGGC
LOC_Os08g15270
Os.48031.1.S1_x_at--463--475Chr08:9269165..9269189 (25 bp)
ATCGGGCAAGAACACCAGAATTTTT
LOC_Os08g15270
Os.48031.1.S1_x_at--467--6454Chr08:9269226..9269250 (25 bp)
GATCACAAGGGTTTATGCACTAAGA
LOC_Os08g15270
Os.48031.1.S1_x_at--804--753Chr08:9269302..9269326 (25 bp)
ATGTCAGCAGACGAAGCCAAAGCTT
LOC_Os08g15270
Os.48031.1.S1_x_at--28--4414Chr08:9269317..9269341 (25 bp)
GCCAAAGCTTATGGACTTGTCGATA
LOC_Os08g15270
Target Sequence 
GTTGCGAGGTCACGAATCATATTACAGGTCTCATGGTATATCTCAGTATAGAAGATGGAATTNGCGATATTTTTTTGTTT
ATAAACTCCCCCGGCGGGTGGTTAATCTCAGGAATGGCGATTTTTGATACGATGCAAACGGTGACACCAGATATATATAC
AATATGCCTCGGANTAGCCGCGTCCATGGCGTCCTTCATTCTGCTTGGAGGAGNACCCACCAAGCGTATAGCATTCCCCC
ACGCGAGGATTATGCTTCACCAACCTGCTAGTGCTTATTATCGGGCAAGAACACCAGAATTTTTACTANAAGTGNAAGAG
TTACACAAAGTTCGCGAANTGATCACAAGGGTTTATGCACTAAGAACAGGCAAGCCTTTNNGGGTTGTATCCGAAGACAT
GGAAAGGGATGTTTNTATGTCAGCAGACGAAGCCAAAGCTTATGGACTTGTCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48031.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis