Browse Element(s) Details


Os.51504.1.A1_at

Description gb:AK062970.1
DB_XREF= gi:32972988
TID=Os.51504.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.51504 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-109-E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-109-E03, full insert sequence.
FL= gb:AK062970.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g106048/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51504.1.A1_at--406--1076Chr12:5653495..5653519 (25 bp)
AGGGATTTTTCAGTTTGATTCATTC
LOC_Os12g10604
Os.51504.1.A1_at--335--3456Chr12:5653505..5653529 (25 bp)
CAGTTTGATTCATTCAATCGTGAAG
LOC_Os12g10604
Os.51504.1.A1_at--1086--9736Chr12:5653518..5653542 (25 bp)
TCAATCGTGAAGTACCGTGCATAGG
LOC_Os12g10604
Os.51504.1.A1_at--145--1196Chr12:5653528..5653552 (25 bp)
AGTACCGTGCATAGGTATCTAGGAA
LOC_Os12g10604
Os.51504.1.A1_at--1071--7856Chr12:5653541..5653565 (25 bp)
GGTATCTAGGAAATAGTTACTTCCA
LOC_Os12g10604
Os.51504.1.A1_at--222--6756Chr12:5653556..5653580 (25 bp)
GTTACTTCCAAGTGAATCTTCCCTA
LOC_Os12g10604
Os.51504.1.A1_at--1085--7336Chr12:5653567..5653591 (25 bp)
GTGAATCTTCCCTAGATACCTATAA
LOC_Os12g10604
Os.51504.1.A1_at--938--9575Chr10:10549918..10549942 (25 bp)
TCTTCCCTAGATACCTATAATCTAT
NONE
Os.51504.1.A1_at--749--176Chr12:5653595..5653619 (25 bp)
ATTTTATTATGATCCATTTCGCGAA
LOC_Os12g10604
Os.51504.1.A1_at--616--10211NONE
TATTATGATCCATTTCGCGAAAAGA
NONE
Os.51504.1.A1_at--34--9331NONE
TCGCGAAAAGATAGATTGTCCCAAA
NONE
Target Sequence 
AGGGATTTTTCAGTTTGATTCATTCAATCGTGAAGTACCGTGCATAGGTATCTAGGAAATAGTTACTTCCAAGTGAATCT
TCCCTAGATACCTATAATCTATTTTATTATGATCCATTTCGCGAAAAGATAGATTGTCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51504.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis