Browse Element(s) Details


OsAffx.23830.2.S1_at

Description tigr:9629.m05681
TID=OsAffx.23830.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome b(N-terminal)b6petB, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g106045/11transposon protein, putative, unclassified
LOC_Os01g579401/11Serine/threonine-protein kinase RLCKVII, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0005792cellular_componentmicrosome
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23830.2.S1_at--727--3231Chr01:33823259..33823442 (25 bp)
CAAGCACAGGTTATTGGAGCTCGCA
LOC_Os01g57940
OsAffx.23830.2.S1_at--697--4411Chr01:33823528..33823552 (25 bp)
GCCAGTTATATCGAAAATGCTCATT
NONE
OsAffx.23830.2.S1_at--340--5512Chr01:33823540..33823564 (25 bp)
GAAAATGCTCATTGCCGGGCGTCCG
NONE
OsAffx.23830.2.S1_at--1131--4275Chr12:5651889..5652096 (25 bp)
CCTGACGCGATTCCGATAGAGAGTT
LOC_Os12g10604
OsAffx.23830.2.S1_at--832--6496Chr12:5652305..5652329 (25 bp)
GATAGAGAGTTGGATCTGCCACATT
LOC_Os12g10604
OsAffx.23830.2.S1_at--917--7956Chr12:5652316..5652340 (25 bp)
GGATCTGCCACATTAGAATTCACGA
LOC_Os12g10604
OsAffx.23830.2.S1_at--123--5216Chr12:5652331..5652355 (25 bp)
GAATTCACGACCAAAGGTGTCTCCA
LOC_Os12g10604
OsAffx.23830.2.S1_at--901--2316Chr12:5652343..5652367 (25 bp)
AAAGGTGTCTCCATATCCAATCAAC
LOC_Os12g10604
OsAffx.23830.2.S1_at--1060--10131NONE
TATCCAATCAACACGTTTAGCGGTT
NONE
OsAffx.23830.2.S1_at--1073--3171NONE
CAATCAACACGTTTAGCGGTTCTCG
NONE
OsAffx.23830.2.S1_at--598--231NONE
ATATTACCCGAGTGGAAGTTCAAGA
NONE
Target Sequence 
CAAGCACAGGTTATTGGAGCTCGCAGGACTGTCTGCTCTCTTGCAGTCCCAAGTTATTGGAGCTAACTATAGATACGATG
AGAATGACAAGAATGATGACATTACCATAAGCCAGTTATATCGAAAATGCTCATTGCCGGGCGTCCGGCAGGGGGAGCCG
GATCGGATGCTCCCCCCGCGCGTCCCTCCTCCACGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGT
TTTAGCTGTATTAACTGCATCGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAA
TTGTGACAGGTGTGCCTGACGCGATTCCGATAGAGAGTTGGATCTGCCACATTAGAATTCACGACCAAAGGTGTCTCCAT
ATCCAATCAACACGTTTAGCGGTTCTCGAGCCGTCAATGATTGGTGAACCGGCGGATCCGTTTGCAACTCCTCTGGAAAT
ATTACCCGAGTGGAAGTTCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23830.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis