Browse Element(s) Details


OsAffx.32329.1.S1_x_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=petB
TID=OsAffx.32329.1
CNT=1
FEA=DNA_57
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=cytochrome B6 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=cytochrome B6
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g106049/11transposon protein, putative, unclassified
LOC_Os01g016891/11Phosphatidylinositol 3- and 4-kinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0007126biological_processmeiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0010212biological_processresponse to ionizing radiation
GO:0043247biological_processtelomere maintenance in response to DNA damage
GO:0000285molecular_function1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0004428molecular_functioninositol or phosphatidylinositol kinase activity
GO:0016303molecular_functionphosphatidylinositol 3-kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32329.1.S1_x_at--110--9858Chr12:5651495..5651519 (25 bp)
TAAATATGTTCCTCCTCATGTCAAC
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--593--2818Chr12:5651566..5651590 (25 bp)
AAGTTGCTACCGGTTTTGCTATGAC
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--686--4878Chr12:5651583..5651607 (25 bp)
GCTATGACTTTTTACTATCGCCCAA
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--992--897Chr12:5651617..5651640 (24 bp)
AGGCTTTTTCCTCGGTTCAATACAT
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--1040--6436Chr12:5651674..5651698 (25 bp)
GATCAGTTCATCGATGGTCAGCAAG
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--696--2997Chr12:5651711..5651735 (25 bp)
AATGATGATCCTGCACGTATTTCGT
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--976--4216Chr12:5651765..5651789 (25 bp)
CCGCGAATTAACTTGGGTCACTGGT
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--841--7095Chr12:5651781..5651805 (25 bp)
GTCACTGGTGTGGTTTTAGCTGTAT
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--179--7255Chr12:5651886..5651910 (25 bp)
GTGCCTGACGCGATTCCGGTAATAG
LOC_Os12g10604
OsAffx.32329.1.S1_x_at--953--7694Chr10:10548297..10548321 (25 bp)
GGGTCAATCCACTTTGACTCGTTTT
NONE
OsAffx.32329.1.S1_x_at--32--10356Chr10:10548327..10548351 (25 bp)
TTTACATACCTTTGTACTTCCTCTG
NONE
Target Sequence 
TAAATATGTTCCTCCTCATGTCAACATATTTTATTGTTTAGGGGGAATTACACTTACTTGTTTTCTAGTACAAGTTGCTA
CCGGTTTTGCTATGACTTTTTACTATCGCCCAACCGTTACAGAGGCTTTTTCCTCGGTTCAATACATAATGACCGAGGCC
AACTTTGGTTGGTTAATCCGATCAGTTCATCGATGGTCAGCAAGTATGATGGTTCTAATGATGATCCTGCACGTATTTCG
TGTGTATCTCACAGGTGGGTTTAAAAAACCCCGCGAATTAACTTGGGTCACTGGTGTGGTTTTAGCTGTATTAACTGCAT
CGTTTGGTGTAACTGGTTATTCTTTACCTTGGGATCAAATTGGTTATTGGGCAGTCAAAATTGTGACAGGTGTGCCTGAC
GCGATTCCGGTAATAGGATCACCTTTAGTGGAGTTATTACGTGGAAGTGCTAGTGTGGGTCAATCCACTTTGACTCGTTT
TTATAGTTTACATACCTTTGTACTTCCTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32329.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis