Browse Element(s) Details


OsAffx.32331.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=rpoA
TID=OsAffx.32331.1
CNT=1
FEA=DNA_59
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=RNA polymerase alpha subunit (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=RNA polymerase alpha subunit
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g106048/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10590Os.48031.1.S1_x_at10/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10590OsAffx.32314.1.S1_at7/1112+5643883..5644631ATP-dependent Clp protease proteolytic subunit, putative, expressed
LOC_Os12g10600Os.26592.1.S1_s_at11/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_s_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.3.S1_x_at7/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10600Os.26592.2.A1_x_at4/1112+5645209..5646598Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os12g10604OsAffx.32330.1.S1_x_at11/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32329.1.S1_x_at9/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604Os.51504.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32331.1.A1_at8/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32332.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32334.1.A1_at7/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.23830.2.S1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10604OsAffx.32333.1.A1_at5/1112+5650040..5656156transposon protein, putative, unclassified
LOC_Os12g10610Os.26688.1.S2_s_at11/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.32337.1.S1_x_at3/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610Os.38764.1.S1_x_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10610OsAffx.20877.1.S1_at1/1112+5656694..5658431retrotransposon protein, putative, unclassified
LOC_Os12g10620NANA12+5661215..5661832hypothetical protein
LOC_Os12g10630OsAffx.31685.1.S1_at11/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed
LOC_Os12g10630OsAffx.24770.1.S1_x_at1/1112+5673241..5676458ZF-HD protein dimerisation region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32331.1.A1_at--977--3638Chr12:5654224..5654248 (25 bp)
CTTCCATCTTGAGTGTTCTTTCTGA
LOC_Os12g10604
OsAffx.32331.1.A1_at--450--10578Chr12:5654239..5654263 (25 bp)
TTCTTTCTGACTTCCGTGTGATATC
LOC_Os12g10604
OsAffx.32331.1.A1_at--1120--8676Chr10:10550601..10550625 (25 bp)
TGTGATATCCGCGATCTCTCTTGAT
NONE
OsAffx.32331.1.A1_at--395--3037Chr10:10550643..10550667 (25 bp)
AATCCGTGGGTTCTGTCAAGTTAGC
NONE
OsAffx.32331.1.A1_at--495--6776Chr10:10550662..10550686 (25 bp)
GTTAGCTATAGGTTGTGCCGTATCA
NONE
OsAffx.32331.1.A1_at--148--3177Chr12:5654405..5654429 (25 bp)
AATTGATGCGGTTCTAACTCCATAG
LOC_Os12g10604
OsAffx.32331.1.A1_at--154--6998Chr12:5654476..5654500 (25 bp)
GTACCGATTCTTCAATACCTGCTAT
LOC_Os12g10604
OsAffx.32331.1.A1_at--249--7418Chr12:5654541..5654565 (25 bp)
GTGATACATGTTCCTTCTGTTTCTC
LOC_Os12g10604
OsAffx.32331.1.A1_at--715--2697Chr12:5654572..5654596 (25 bp)
AAGCTCTTCGCAAGGCAATACCAAC
LOC_Os12g10604
OsAffx.32331.1.A1_at--305--1397Chr12:5654649..5654673 (25 bp)
AGACGCTTACTATCTACTCTTGATT
LOC_Os12g10604
OsAffx.32331.1.A1_at--424--10799Chr12:5654668..5654692 (25 bp)
TTGATTCAACACACTTCCACTGTAG
LOC_Os12g10604
Target Sequence 
CTTCCATCTTGAGTGTTCTTTCTGACTTCCGTGTGATATCCGCGATCTCTCTTGATCCGTAACTCAATACGGAAATCCGT
GGGTTCTGTCAAGTTAGCTATAGGTTGTGCCGTATCAACGATTTCTACGGAAGGCGGTAAGATAATATCTTGGGCAGTTA
TGTATCTAGGACCTTTGACGCAAATTGATGCGGTTCTAACTCCATAGAGATTACTTCTCAATACAATTTCTTTCAAATTT
AGTAAAATTTCTTGTACCGATTCTTCAATACCTGCTATTGTAGAATATTCGTGCGGCACGCTCCCAAATTTTGCATGTGT
GATACATGTTCCTTCTGTTTCTCCAAGTAAAGCTCTTCGCAAGGCAATACCAACGGTATCCGCTTGACCTTTTCTAAGCG
GGGACAGAATGAAACGACCATAATAAAGACGCTTACTATCTACTCTTGATTCAACACACTTCCACTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32331.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis